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  5. Spa_g00980

Spa_g00980


Description : not classified & original description: none


Gene families : OG0001501 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001501_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Spa_g00980

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00220910 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g03100,... 0.03 OrthoFinder output from all 47 species
LOC_Os10g28665.1 LOC_Os10g28665 Pentatricopeptide repeat-containing protein At1g03100,... 0.05 OrthoFinder output from all 47 species
Zm00001e019596_P001 Zm00001e019596 Pentatricopeptide repeat-containing protein At1g69290... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005215 transporter activity IEP HCCA
BP GO:0006810 transport IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 233 291
IPR002885 Pentatricopeptide_repeat 412 438
IPR002885 Pentatricopeptide_repeat 519 547
IPR002885 Pentatricopeptide_repeat 447 476
No external refs found!