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  5. Ore_g45161

Ore_g45161


Description : not classified & original description: none


Gene families : OG0008372 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008372_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g45161
Cluster HCCA: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00109p00045690 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g25630... 0.02 OrthoFinder output from all 47 species
Adi_g021144 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0028.g023894 No alias not classified & original description: CDS=1-2331 0.03 OrthoFinder output from all 47 species
Gb_09464 No alias Pentatricopeptide repeat-containing protein At5g21222... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0068.g016362 No alias not classified & original description: CDS=314-2092 0.02 OrthoFinder output from all 47 species
Solyc07g032380.4.1 Solyc07g032380 Pentatricopeptide repeat-containing protein At5g21222... 0.03 OrthoFinder output from all 47 species
Solyc08g068230.4.1 Solyc08g068230 Pentatricopeptide repeat-containing protein At5g25630... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0030163 protein catabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 79 125
IPR002885 Pentatricopeptide_repeat 48 76
No external refs found!