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  5. Ore_g44903

Ore_g44903


Description : not classified & original description: none


Gene families : OG0000629 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000629_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g44903

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00115360 evm_27.TU.AmTr_v1... DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Adi_g021909 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g057149 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.20G077000.1 Ceric.20G077000 not classified & original description: pacid=50565979... 0.03 OrthoFinder output from all 47 species
Ceric.23G070100.1 Ceric.23G070100 not classified & original description: pacid=50609964... 0.04 OrthoFinder output from all 47 species
Cre06.g266416 No alias DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.02 OrthoFinder output from all 47 species
Dac_g22791 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g15250 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01011809001 No alias DExH-box ATP-dependent RNA helicase DExH5, mitochondrial... 0.03 OrthoFinder output from all 47 species
Gb_05411 No alias DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.02 OrthoFinder output from all 47 species
LOC_Os01g02884.1 LOC_Os01g02884 DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os04g35260.1 LOC_Os04g35260 DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.02 OrthoFinder output from all 47 species
Lfl_g02413 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_291146g0010 No alias DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.03 OrthoFinder output from all 47 species
Mp5g09990.1 No alias DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.02 OrthoFinder output from all 47 species
Msp_g14172 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g26613 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g22351 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06502 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0070.g016669 No alias not classified & original description: CDS=25-1776 0.02 OrthoFinder output from all 47 species
Solyc01g006970.4.1 Solyc01g006970 DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Solyc01g103690.4.1 Solyc01g103690 DExH-box ATP-dependent RNA helicase DExH7, chloroplastic... 0.02 OrthoFinder output from all 47 species
Tin_g02904 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e004608_P001 Zm00001e004608 DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 518 647
IPR011545 DEAD/DEAH_box_helicase_dom 261 412
IPR011709 DEAD-box_helicase_OB_fold 869 951
IPR007502 Helicase-assoc_dom 711 792
No external refs found!