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  5. Ore_g44236

Ore_g44236 (UBC20)


Aliases : UBC20

Description : E2 ubiquitin-conjugating protein & original description: none


Gene families : OG0002468 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002468_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g44236
Cluster HCCA: Cluster_78

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00053p00175140 UBC20,... Cell cycle.mitosis and meiosis.metaphase to anaphase... 0.06 OrthoFinder output from all 47 species
AT1G50490 UBC20 ubiquitin-conjugating enzyme 20 0.03 OrthoFinder output from all 47 species
Als_g05340 UBC20 E2 ubiquitin-conjugating protein & original description: none 0.03 OrthoFinder output from all 47 species
Als_g37477 UBC19 E2 ubiquitin-conjugating protein & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.25G015500.1 UBC19, Ceric.25G015500 E2 ubiquitin-conjugating protein & original description:... 0.03 OrthoFinder output from all 47 species
Dcu_g30508 UBC19 E2 ubiquitin-conjugating protein & original description: none 0.06 OrthoFinder output from all 47 species
LOC_Os01g16650.1 UBC20, LOC_Os01g16650 E2 ubiquitin conjugating protein (APC/C) 0.08 OrthoFinder output from all 47 species
Len_g15646 UBC20 E2 ubiquitin-conjugating protein & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g11955 UBC19 E2 ubiquitin-conjugating protein & original description: none 0.11 OrthoFinder output from all 47 species
Msp_g02664 UBC20 E2 ubiquitin-conjugating protein & original description: none 0.07 OrthoFinder output from all 47 species
Nbi_g38909 UBC20 E2 ubiquitin-conjugating protein & original description: none 0.11 OrthoFinder output from all 47 species
Sam_g37401 No alias E2 ubiquitin-conjugating protein & original description: none 0.1 OrthoFinder output from all 47 species
Solyc11g065190.3.1 UBC20, Solyc11g065190 E2 ubiquitin conjugating protein (APC/C) 0.05 OrthoFinder output from all 47 species
Spa_g48430 UBC20 E2 ubiquitin-conjugating protein & original description: none 0.08 OrthoFinder output from all 47 species
Zm00001e017345_P001 UBC20, Zm00001e017345 E2 ubiquitin conjugating protein (APC/C) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008649 rRNA methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016436 rRNA (uridine) methyltransferase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0031167 rRNA methylation IEP HCCA
BP GO:0032259 methylation IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
MF GO:0070042 rRNA (uridine-N3-)-methyltransferase activity IEP HCCA
BP GO:0070475 rRNA base methylation IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140102 catalytic activity, acting on a rRNA IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR000608 UBQ-conjugat_E2 2 120
No external refs found!