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  5. Ore_g43395

Ore_g43395 (EMB2776, LIS)


Aliases : EMB2776, LIS

Description : component *(PRPF4) of spliceosomal U4/U6 snRNP & original description: none


Gene families : OG0003984 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003984_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g43395
Cluster HCCA: Cluster_38

Target Alias Description ECC score Gene Family Method Actions
Adi_g080387 No alias component *(PRPF4) of spliceosomal U4/U6 snRNP &... 0.03 OrthoFinder output from all 47 species
Aev_g07826 EMB2776, LIS component *(PRPF4) of spliceosomal U4/U6 snRNP &... 0.02 OrthoFinder output from all 47 species
Cba_g10893 EMB2776, LIS component *(PRPF4) of spliceosomal U4/U6 snRNP &... 0.04 OrthoFinder output from all 47 species
Len_g43698 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g09580 EMB2776, LIS component *(PRPF4) of spliceosomal U4/U6 snRNP &... 0.02 OrthoFinder output from all 47 species
Sam_g29759 No alias component *(PRPF4) of spliceosomal U4/U6 snRNP &... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR014906 PRP4-like 179 206
IPR001680 WD40_repeat 560 596
IPR001680 WD40_repeat 349 386
IPR001680 WD40_repeat 438 469
IPR001680 WD40_repeat 518 554
IPR001680 WD40_repeat 390 427
IPR001680 WD40_repeat 320 344
IPR001680 WD40_repeat 475 511
No external refs found!