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  5. Ore_g42589

Ore_g42589


Description : EC_4.2 carbon-oxygen lyase & original description: none


Gene families : OG0000492 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000492_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g42589
Cluster HCCA: Cluster_79

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00039p00189000 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.03 OrthoFinder output from all 47 species
AMTR_s00078p00106380 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.02 OrthoFinder output from all 47 species
AMTR_s00120p00111300 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.02 OrthoFinder output from all 47 species
AT1G04680 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G24230 No alias Pectate lyase family protein 0.03 OrthoFinder output from all 47 species
AT3G24670 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G27400 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT4G22080 RHS14 root hair specific 14 0.09 OrthoFinder output from all 47 species
AT4G24780 No alias Pectin lyase-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G09280 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
Aev_g38995 RHS14 EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g27583 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g20815 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g21580 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene17935.t1 Aspi01Gene17935 EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0032.g024858 No alias EC_4.2 carbon-oxygen lyase & original description: CDS=1-1242 0.05 OrthoFinder output from all 47 species
Azfi_s0033.g025097 No alias EC_4.2 carbon-oxygen lyase & original description: CDS=1-1140 0.04 OrthoFinder output from all 47 species
Ceric.05G036500.1 Ceric.05G036500 EC_4.2 carbon-oxygen lyase & original description:... 0.06 OrthoFinder output from all 47 species
Ceric.14G053300.1 Ceric.14G053300 EC_4.2 carbon-oxygen lyase & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.34G020500.1 Ceric.34G020500 EC_4.2 carbon-oxygen lyase & original description:... 0.02 OrthoFinder output from all 47 species
Dac_g11741 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g12057 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g39421 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g43009 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.09 OrthoFinder output from all 47 species
Dde_g29530 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g46389 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.1 OrthoFinder output from all 47 species
GSVIVT01007582001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.02 OrthoFinder output from all 47 species
GSVIVT01014682001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.03 OrthoFinder output from all 47 species
GSVIVT01016209001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.01 OrthoFinder output from all 47 species
GSVIVT01033671001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.03 OrthoFinder output from all 47 species
LOC_Os04g05050.1 LOC_Os04g05050 pectate lyase 0.03 OrthoFinder output from all 47 species
LOC_Os05g22800.1 LOC_Os05g22800 pectate lyase 0.04 OrthoFinder output from all 47 species
LOC_Os10g31910.1 LOC_Os10g31910 pectate lyase 0.05 OrthoFinder output from all 47 species
Len_g13639 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.04 OrthoFinder output from all 47 species
MA_101171g0010 No alias pectate lyase 0.04 OrthoFinder output from all 47 species
MA_103716g0010 No alias pectate lyase 0.02 OrthoFinder output from all 47 species
MA_10426822g0020 No alias pectate lyase 0.04 OrthoFinder output from all 47 species
MA_10430145g0030 No alias pectate lyase 0.03 OrthoFinder output from all 47 species
MA_203992g0010 No alias pectate lyase 0.02 OrthoFinder output from all 47 species
MA_62112g0010 No alias pectate lyase 0.03 OrthoFinder output from all 47 species
MA_91467g0020 No alias pectate lyase 0.03 OrthoFinder output from all 47 species
MA_97947g0010 No alias pectate lyase 0.02 OrthoFinder output from all 47 species
Mp3g01000.1 No alias pectate lyase 0.03 OrthoFinder output from all 47 species
Mp8g00770.1 No alias pectate lyase 0.02 OrthoFinder output from all 47 species
Ppi_g03086 RHS14 EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g27978 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0093.g019058 No alias EC_4.2 carbon-oxygen lyase & original description: CDS=1-1206 0.03 OrthoFinder output from all 47 species
Solyc02g093580.4.1 Solyc02g093580 pectate lyase 0.02 OrthoFinder output from all 47 species
Solyc05g014000.4.1 Solyc05g014000 pectate lyase 0.02 OrthoFinder output from all 47 species
Solyc06g083580.4.1 Solyc06g083580 pectate lyase 0.02 OrthoFinder output from all 47 species
Spa_g06272 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g31391 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g47003 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g57258 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g09317 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.06 OrthoFinder output from all 47 species
Zm00001e004654_P002 Zm00001e004654 pectate lyase 0.03 OrthoFinder output from all 47 species
Zm00001e008755_P002 Zm00001e008755 pectate lyase 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005215 transporter activity IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR002022 Pec_lyase 58 233
No external refs found!