Ore_g42410 (ATPUB17, PUB17)

Aliases : ATPUB17, PUB17

Description : E3 ubiquitin ligase *(PUB8) & original description: none

Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ore_g42410

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00025p00052670	PUB13, ATPUB13,...	Protein degradation.peptide tagging.Ubiquitin...	0.02	OrthoFinder output from all 47 species
AMTR_s00086p00031680	evm_27.TU.AmTr_v1...	U-box domain-containing protein 4 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
LOC_Os02g49950.1	LOC_Os02g49950	E3 ubiquitin ligase (PUB)	0.02	OrthoFinder output from all 47 species
Len_g08985	ATPUB17, PUB17	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g26460	ATPUB17, PUB17	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0159.g023812	PUB13, ATPUB13	E3 ubiquitin ligase & original description: CDS=1-1965	0.03	OrthoFinder output from all 47 species
Sam_g25175	No alias	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Smo181353	PUB13, ATPUB13	Protein degradation.peptide tagging.Ubiquitin...	0.02	OrthoFinder output from all 47 species
Solyc11g008390.2.1	PUB14, ATPUB14,...	E3 ubiquitin ligase (PUB)	0.03	OrthoFinder output from all 47 species
Spa_g24085	PUB14, ATPUB14	not classified & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0015267	channel activity	IEP	HCCA
MF	GO:0022803	passive transmembrane transporter activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000225	Armadillo	156	195
IPR003613	Ubox_domain	26	95

External Links

No external refs found!