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  5. Ore_g41040

Ore_g41040 (EMB976)


Aliases : EMB976

Description : plastidial splicing factor *(PDM4) & original description: none


Gene families : OG0007469 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007469_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g41040
Cluster HCCA: Cluster_108

Target Alias Description ECC score Gene Family Method Actions
Adi_g059643 EMB976 plastidial splicing factor *(PDM4) & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g68889 EMB976 plastidial splicing factor *(PDM4) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene25909.t1 EMB976, Aspi01Gene25909 plastidial splicing factor *(PDM4) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g01274 EMB976 plastidial splicing factor *(PDM4) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01024409001 EMB976 Pentatricopeptide repeat-containing protein At5g27270... 0.04 OrthoFinder output from all 47 species
Mp1g22180.1 EMB976 Pentatricopeptide repeat-containing protein At5g27270... 0.02 OrthoFinder output from all 47 species
Solyc03g097000.3.1 EMB976, Solyc03g097000 Pentatricopeptide repeat-containing protein At5g27270... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006275 regulation of DNA replication IEP HCCA
BP GO:0006415 translational termination IEP HCCA
BP GO:0022411 cellular component disassembly IEP HCCA
BP GO:0032984 protein-containing complex disassembly IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0051052 regulation of DNA metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 649 678
IPR002885 Pentatricopeptide_repeat 550 578
IPR002885 Pentatricopeptide_repeat 586 606
IPR002885 Pentatricopeptide_repeat 687 707
IPR002885 Pentatricopeptide_repeat 513 535
IPR033443 PPR_long 341 492
IPR002885 Pentatricopeptide_repeat 266 311
IPR002885 Pentatricopeptide_repeat 196 245
IPR002885 Pentatricopeptide_repeat 718 765
IPR002885 Pentatricopeptide_repeat 856 900
IPR002885 Pentatricopeptide_repeat 774 834
IPR002885 Pentatricopeptide_repeat 914 972
No external refs found!