Ore_g40907 (CDC48B)

Aliases : CDC48B

Description : platform ATPase CDC48 & original description: none

Gene families : OG0000324 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000324_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ore_g40907

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00072p00117380	evm_27.TU.AmTr_v1...	Cell division control protein 48 homolog D...	0.02	OrthoFinder output from all 47 species
AMTR_s00085p00052820	CDC48A, CDC48,...	Cell division cycle protein 48 homolog OS=Glycine max	0.03	OrthoFinder output from all 47 species
AT2G03670	CDC48B	cell division cycle 48B	0.03	OrthoFinder output from all 47 species
AT3G01610	emb1354, CDC48C	cell division cycle 48C	0.03	OrthoFinder output from all 47 species
AT3G53230	No alias	ATPase, AAA-type, CDC48 protein	0.02	OrthoFinder output from all 47 species
AT3G56690	CIP111	Cam interacting protein 111	0.03	OrthoFinder output from all 47 species
AT5G03340	No alias	ATPase, AAA-type, CDC48 protein	0.02	OrthoFinder output from all 47 species
Adi_g000420	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g035605	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g080378	CDC48A, CDC48, ATCDC48	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Adi_g080379	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Als_g14973	No alias	platform ATPase CDC48 & original description: none	0.02	OrthoFinder output from all 47 species
Als_g38557	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g02580	CDC48B	platform ATPase CDC48 & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g05302	emb1354, CDC48C	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g15787	CDC48B	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.16G049300.1	CDC48B, Ceric.16G049300	platform ATPase CDC48 & original description:...	0.02	OrthoFinder output from all 47 species
Ceric.16G061700.1	emb1354, CDC48C,...	platform ATPase CDC48 & original description:...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021463.10	No alias	Cell division control protein 48 homolog D...	0.02	OrthoFinder output from all 47 species
Dac_g09762	emb1354, CDC48C	platform ATPase CDC48 & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g10601	emb1354, CDC48C	platform ATPase CDC48 & original description: none	0.05	OrthoFinder output from all 47 species
Ehy_g03992	emb1354, CDC48C	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g07885	No alias	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g09095	CDC48B	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g09970	No alias	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01025723001	No alias	Cell division control protein 48 homolog D...	0.03	OrthoFinder output from all 47 species
GSVIVT01025783001	CIP111	Calmodulin-interacting protein 111 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
LOC_Os11g11340.1	CIP111, LOC_Os11g11340	Calmodulin-interacting protein 111 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
MA_10431342g0010	CIP111	Calmodulin-interacting protein 111 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Mp2g12350.1	emb1354, CDC48C	Calmodulin-interacting protein 111 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Nbi_g36367	CIP111	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g44449	emb1354, CDC48C	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g13004	No alias	platform ATPase CDC48 & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g13016	CIP111	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Pnu_g16719	No alias	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g12429	No alias	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g51289	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Solyc01g068330.4.1	emb1354, CDC48C,...	Cell division control protein 48 homolog C...	0.02	OrthoFinder output from all 47 species
Solyc06g074980.3.1	Solyc06g074980	platform ATPase (CDC48)	0.02	OrthoFinder output from all 47 species
Spa_g04738	emb1354, CDC48C	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e000416_P002	Zm00001e000416	platform ATPase (CDC48)	0.04	OrthoFinder output from all 47 species
Zm00001e021405_P001	CIP111, Zm00001e021405	Calmodulin-interacting protein 111 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Zm00001e035514_P002	emb1354, CDC48C,...	Cell division control protein 48 homolog C...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
BP	GO:0043248	proteasome assembly	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
MF	GO:0046983	protein dimerization activity	IEP	HCCA
MF	GO:0060090	molecular adaptor activity	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003959	ATPase_AAA_core	325	462
IPR003959	ATPase_AAA_core	50	190
IPR041569	AAA_lid_3	214	262
IPR041569	AAA_lid_3	485	530

External Links

No external refs found!

Ore_g40907 (CDC48B)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation