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Aev_g18472 (PUM1, APUM1)


Aliases : PUM1, APUM1

Description : not classified & original description: none


Gene families : OG0000583 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000583_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aev_g18472

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00251030 APUM2, PUM2,... Pumilio homolog 2 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT3G20250 PUM5, APUM5 pumilio 5 0.03 OrthoFinder output from all 47 species
Adi_g010436 APUM2, PUM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g011593 PUM1, APUM1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g075414 APUM2, PUM2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g079535 APUM2, PUM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g61802 PUM1, APUM1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g61874 APUM4, PUM4 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g18146 APUM2, PUM2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.18G068300.1 APUM2, PUM2,... not classified & original description: pacid=50621207... 0.05 OrthoFinder output from all 47 species
Ceric.28G029200.1 PUM1, APUM1,... not classified & original description: pacid=50569734... 0.04 OrthoFinder output from all 47 species
Dac_g04724 APUM2, PUM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g48916 APUM2, PUM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g25094 PUM1, APUM1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01016507001 PUM1, APUM1 Pumilio homolog 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01029553001 PUM5, APUM5 Pumilio homolog 5 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01031557001 APUM6, PUM6 Pumilio homolog 5 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
LOC_Os01g62650.1 PUM1, APUM1,... Pumilio homolog 2 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os08g40830.1 LOC_Os08g40830 Pumilio homolog 5 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Lfl_g08945 APUM2, PUM2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g10215 APUM4, PUM4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10159883g0010 PUM5, APUM5 Pumilio homolog 5 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_12280g0010 PUM1, APUM1 Pumilio homolog 1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Mp7g16700.1 PUM1, APUM1 Pumilio homolog 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Nbi_g08859 PUM1, APUM1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g36029 PUM1, APUM1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Smo86145 APUM4, PUM4 Pumilio homolog 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Solyc03g123980.4.1 PUM5, APUM5,... Pumilio homolog 5 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Solyc06g076340.3.1 APUM2, PUM2,... Pumilio homolog 1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Zm00001e016242_P002 PUM1, APUM1,... Pumilio homolog 4 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e027653_P001 PUM1, APUM1,... Pumilio homolog 2 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e029661_P001 APUM2, PUM2,... Pumilio homolog 2 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
InterPro domains Description Start Stop
IPR012940 NABP 363 782
IPR001313 Pumilio_RNA-bd_rpt 824 856
IPR001313 Pumilio_RNA-bd_rpt 1004 1038
IPR001313 Pumilio_RNA-bd_rpt 787 821
IPR001313 Pumilio_RNA-bd_rpt 901 926
IPR001313 Pumilio_RNA-bd_rpt 1050 1079
IPR001313 Pumilio_RNA-bd_rpt 970 1001
IPR001313 Pumilio_RNA-bd_rpt 859 892
IPR001313 Pumilio_RNA-bd_rpt 931 966
No external refs found!