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  5. Ore_g40661

Ore_g40661


Description : circadian clock activation factor *(TCP20) & original description: none


Gene families : OG0000443 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000443_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g40661

Target Alias Description ECC score Gene Family Method Actions
AT1G69690 No alias TCP family transcription factor 0.03 OrthoFinder output from all 47 species
AT5G23280 No alias TCP family transcription factor 0.04 OrthoFinder output from all 47 species
Adi_g060147 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g088075 AtTCP14, TCP14 TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g01440 AtTCP14, TCP14 TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g33212 No alias TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g19251 AT-TCP20, TCP20,... circadian clock activation factor *(TCP20) & original... 0.04 OrthoFinder output from all 47 species
Aob_g03271 AT-TCP20, TCP20,... TCP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0013.g013244 No alias TCP-type transcription factor & original description: CDS=1-1674 0.05 OrthoFinder output from all 47 species
Dcu_g06407 No alias TCP-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g26686 AT-TCP20, TCP20,... TCP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01008023001 No alias RNA biosynthesis.transcriptional activation.TCP... 0.03 OrthoFinder output from all 47 species
GSVIVT01023283001 No alias RNA biosynthesis.transcriptional activation.TCP... 0.04 OrthoFinder output from all 47 species
LOC_Os02g51280.1 LOC_Os02g51280 transcription factor (TCP) 0.04 OrthoFinder output from all 47 species
Lfl_g07877 No alias TCP-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
MA_762628g0010 No alias transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
Mp7g09490.1 No alias transcription factor (TCP) 0.04 OrthoFinder output from all 47 species
Pnu_g02433 AtTCP14, TCP14 TCP-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0069.g016510 No alias TCP-type transcription factor & original description: CDS=1-2211 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0175.g024570 No alias TCP-type transcription factor & original description: CDS=1-1014 0.03 OrthoFinder output from all 47 species
Smo438214 No alias RNA biosynthesis.transcriptional activation.TCP... 0.03 OrthoFinder output from all 47 species
Smo441321 No alias RNA biosynthesis.transcriptional activation.TCP... 0.04 OrthoFinder output from all 47 species
Solyc01g103780.4.1 Solyc01g103780 transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
Solyc08g080150.1.1 Solyc08g080150 transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
Spa_g17288 AtTCP14, TCP14 TCP-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e003744_P001 Zm00001e003744 transcription factor (TCP) 0.03 OrthoFinder output from all 47 species
Zm00001e015209_P001 Zm00001e015209 transcription factor (TCP). CHE circadian clock repression factor 0.04 OrthoFinder output from all 47 species
Zm00001e015821_P001 Zm00001e015821 transcription factor (TCP) 0.04 OrthoFinder output from all 47 species
Zm00001e023897_P001 Zm00001e023897 transcription factor (TCP) 0.04 OrthoFinder output from all 47 species
Zm00001e039492_P001 Zm00001e039492 transcription factor (TCP) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
InterPro domains Description Start Stop
IPR017887 TF_TCP_subgr 111 231
No external refs found!