Zm00001d039411


Description : 31.4 cell.vesicle transport Coatomer, alpha subunit


Gene families : OG_01_0002629 (Gene family) Phylogenetic Tree(s): OG0002629_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Zm00001d039411
Cluster HCCA cluster: Cluster_304

Target Alias Description ECC score Gene Family Method Actions
AT1G62020 No alias Coatomer, alpha subunit 0.21 Gene family
AT2G21390 No alias Coatomer, alpha subunit 0.25 Gene family
Cpa|evm.model.tig00000144.151 No alias 31.4 cell.vesicle transport Coatomer, alpha subunit 0.03 Gene family
Cpa|evm.model.tig00000144.152 No alias 31.4 cell.vesicle transport Coatomer, alpha subunit 0.03 Gene family
Cre13.g565850 No alias 31.4 cell.vesicle transport Coatomer, alpha subunit 0.09 Gene family
GSVIVT01009813001 No alias 31.4 cell.vesicle transport Coatomer, alpha subunit 0.09 Gene family
LOC_Os03g50340 Os03g0711400 31.4 cell.vesicle transport Coatomer, alpha subunit 0.15 Gene family
LOC_Os03g50350 Os03g0711500 31.4 cell.vesicle transport Coatomer, alpha subunit 0.16 Gene family
LOC_Os09g04110 Os09g0127800 31.4 cell.vesicle transport Coatomer, alpha subunit 0.15 Gene family
MA_10428405g0010 No alias 31.4 cell.vesicle transport Coatomer, alpha subunit 0.02 Gene family
MA_10429054g0020 No alias 31.4 cell.vesicle transport Coatomer, alpha subunit 0.08 Gene family
Smo77651 PACid_15420182 No description available 0.02 Gene family
Smo85610 PACid_15421327 No description available 0.07 Gene family
Solyc04g080980.2.1 Solyc04g080980.2 31.4 cell.vesicle transport Coatomer, alpha subunit 0.2 Gene family
Solyc07g032100.3.1 Solyc07g032100.3 31.4 cell.vesicle transport Coatomer, alpha subunit 0.19 Gene family

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA InterProScan
MF GO:0005515 protein binding IEA InterProScan
BP GO:0006886 intracellular protein transport IEA InterProScan
BP GO:0016192 vesicle-mediated transport IEA InterProScan
CC GO:0030126 COPI vesicle coat IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR006692 Coatomer_WD-assoc_reg 348 768
IPR001680 WD40_repeat 43 79
IPR001680 WD40_repeat 126 163
IPR001680 WD40_repeat 198 231
IPR001680 WD40_repeat 84 121
IPR001680 WD40_repeat 241 276
IPR010714 Coatomer_asu_C 815 1216
No external refs found!