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  5. Ore_g38566

Ore_g38566


Description : not classified & original description: none


Gene families : OG0001047 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001047_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g38566

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00036p00235910 evm_27.TU.AmTr_v1... No description available 0.05 OrthoFinder output from all 47 species
AMTR_s00099p00056810 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AMTR_s00169p00047130 evm_27.TU.AmTr_v1... No description available 0.06 OrthoFinder output from all 47 species
AT1G33680 No alias KH domain-containing protein 0.04 OrthoFinder output from all 47 species
Adi_g023605 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g077319 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g103366 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g105498 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g02435 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g33204 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g08425 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g08444 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene69176.t1 Aspi01Gene69176 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g72682 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g78248 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.03G027700.1 Ceric.03G027700 not classified & original description: pacid=50573278... 0.03 OrthoFinder output from all 47 species
Ceric.20G036400.1 Ceric.20G036400 not classified & original description: pacid=50567078... 0.05 OrthoFinder output from all 47 species
Dcu_g11741 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g02873 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g03956 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g06078 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g14472 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01036378001 No alias No description available 0.03 OrthoFinder output from all 47 species
Gb_04922 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Gb_31122 No alias Protein BTR1 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Len_g23905 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g59778 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g02045 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g10191 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10434164g0020 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Mp3g07780.1 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Pnu_g19200 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g33967 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g10281 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g63768 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000424 No alias not classified & original description: CDS=117-1961 0.03 OrthoFinder output from all 47 species
Sam_g18640 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo437890 No alias Protein BTR1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Solyc11g040370.2.1 Solyc11g040370 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Solyc12g095960.3.1 Solyc12g095960 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Tin_g07129 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e014452_P001 Zm00001e014452 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Zm00001e021868_P005 Zm00001e021868 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e024927_P001 Zm00001e024927 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e029163_P001 Zm00001e029163 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005669 transcription factor TFIID complex IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006476 protein deacetylation IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016575 histone deacetylation IEP HCCA
BP GO:0035601 protein deacylation IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
BP GO:0098732 macromolecule deacylation IEP HCCA
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 158 220
IPR004088 KH_dom_type_1 65 131
No external refs found!