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  5. Ore_g38534

Ore_g38534


Description : component *(ZCCHC8) of Nuclear Exosome Targeting (NEXT) activation complex & original description: none


Gene families : OG0004396 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004396_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g38534
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
Aob_g02041 No alias component *(ZCCHC8) of Nuclear Exosome Targeting (NEXT)... 0.02 OrthoFinder output from all 47 species
Aop_g13090 No alias component *(ZCCHC8) of Nuclear Exosome Targeting (NEXT)... 0.03 OrthoFinder output from all 47 species
Ehy_g05083 No alias component *(ZCCHC8) of Nuclear Exosome Targeting (NEXT)... 0.05 OrthoFinder output from all 47 species
Ehy_g14866 No alias component *(ZCCHC8) of Nuclear Exosome Targeting (NEXT)... 0.03 OrthoFinder output from all 47 species
Gb_14574 No alias component ZCCHC8 of Nuclear Exosome Targeting (NEXT)... 0.03 OrthoFinder output from all 47 species
LOC_Os06g30020.1 LOC_Os06g30020 component ZCCHC8 of Nuclear Exosome Targeting (NEXT)... 0.02 OrthoFinder output from all 47 species
MA_15598g0010 No alias component ZCCHC8 of Nuclear Exosome Targeting (NEXT)... 0.03 OrthoFinder output from all 47 species
Pir_g25221 No alias component *(ZCCHC8) of Nuclear Exosome Targeting (NEXT)... 0.06 OrthoFinder output from all 47 species
Pnu_g20212 No alias component *(ZCCHC8) of Nuclear Exosome Targeting (NEXT)... 0.02 OrthoFinder output from all 47 species
Sam_g35280 No alias component *(ZCCHC8) of Nuclear Exosome Targeting (NEXT)... 0.02 OrthoFinder output from all 47 species
Solyc03g045060.3.1 Solyc03g045060 component ZCCHC8 of Nuclear Exosome Targeting (NEXT)... 0.02 OrthoFinder output from all 47 species
Spa_g07889 No alias component *(ZCCHC8) of Nuclear Exosome Targeting (NEXT)... 0.03 OrthoFinder output from all 47 species
Tin_g11945 No alias component *(ZCCHC8) of Nuclear Exosome TargeTing (NEXT)... 0.02 OrthoFinder output from all 47 species
Zm00001e022737_P001 Zm00001e022737 component ZCCHC8 of Nuclear Exosome Targeting (NEXT)... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006528 asparagine metabolic process IEP HCCA
BP GO:0006529 asparagine biosynthetic process IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
BP GO:0009067 aspartate family amino acid biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR006568 PSP_pro-rich 299 338
No external refs found!