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  5. Ore_g38066

Ore_g38066


Description : not classified & original description: none


Gene families : OG0000677 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000677_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g38066

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00175460 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
AMTR_s00027p00222730 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
Adi_g107812 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g14895 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07409 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g02358 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g03583 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g07392 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g04897 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g05308 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g13057 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.04G058800.1 Ceric.04G058800 not classified & original description: pacid=50631350... 0.04 OrthoFinder output from all 47 species
Dac_g16369 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g01827 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g01919 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g00874 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g10488 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01015774001 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01018314001 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01022440001 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Gb_21243 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Gb_26190 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Gb_38984 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Len_g09447 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g10280 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06685 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10427644g0030 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Ore_g18521 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g31530 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g21786 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g25435 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g22231 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g52296 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0162.g023957 No alias not classified & original description: CDS=113-2587 0.02 OrthoFinder output from all 47 species
Solyc10g062340.2.1 Solyc10g062340 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Spa_g15243 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g19363 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g47784 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g50922 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g08252 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g10840 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g12919 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e012880_P004 Zm00001e012880 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
CC GO:0000152 nuclear ubiquitin ligase complex IEP HCCA
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
CC GO:0005680 anaphase-promoting complex IEP HCCA
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005991 trehalose metabolic process IEP HCCA
BP GO:0005992 trehalose biosynthetic process IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0046351 disaccharide biosynthetic process IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 179 239
IPR000504 RRM_dom 99 168
IPR000504 RRM_dom 275 332
No external refs found!