Zm00001d039181 (GRMZM5G830932)


Aliases : GRMZM5G830932

Description : 27.3.85 RNA.regulation of transcription.sigma like plant Encodes a sigma-like transcription factor, Sigma 3 (SIG3 or SIGC). As a subunit of chloroplast RNA polymerase, SIG3 confers the ability to recognize promoter sequences on the core enzyme. SIG3 transcribes specifically the psbN gene in plastids. RNApolymerase sigma-subunit C (SIGC)


Gene families : OG_01_0001192 (Gene family) Phylogenetic Tree(s): OG0001192_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Zm00001d039181
Cluster HCCA cluster: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
Cre03.g194950 No alias 27.3.85 RNA.regulation of transcription.sigma like plant... 0.02 Gene family
GSVIVT01032193001 No alias 27.3.85 RNA.regulation of transcription.sigma like plant... 0.06 Gene family
GSVIVT01035330001 No alias 27.3.85 RNA.regulation of transcription.sigma like plant... 0.02 Gene family
LOC_Os05g51150 Os05g0589200 27.3.85 RNA.regulation of transcription.sigma like plant... 0.07 Gene family
Solyc01g081490.3.1 Solyc01g081490.3 27.3.85 RNA.regulation of transcription.sigma like plant... 0.02 Gene family
Solyc09g008040.3.1 Solyc09g008040.3 No description available 0.03 Gene family

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA InterProScan
BP GO:0006352 DNA-templated transcription, initiation IEA InterProScan
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR007627 RNA_pol_sigma70_r2 339 396
IPR007624 RNA_pol_sigma70_r3 414 486
IPR007630 RNA_pol_sigma70_r4 500 553
No external refs found!