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  5. Zm00001d039078

Zm00001d039078 (GRMZM2G163359)


Aliases : GRMZM2G163359

Description : 35.1.5 not assigned.no ontology.pentatricopeptide (PPR) repeat-containing protein EMBRYO DEFECTIVE 2744 (EMB2744)


Gene families : OG_01_0000355 (Gene family) Phylogenetic Tree(s): OG0000355_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Zm00001d039078
Cluster HCCA cluster: Cluster_341

Target Alias Description ECC score Gene Family Method Actions
AT1G25360 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.08 Gene family
AT2G22070 No alias pentatricopeptide (PPR) repeat-containing protein 0.04 Gene family
AT5G39680 EMB2744 Pentatricopeptide repeat (PPR) superfamily protein 0.03 Gene family
GSVIVT01009866001 No alias No description available 0.05 Gene family
GSVIVT01018922001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
LOC_Os03g13230 Os03g0235200 No description available 0.06 Gene family
LOC_Os03g56400 Os03g0775400 No description available 0.04 Gene family
LOC_Os05g12130 Os05g0212100 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
LOC_Os05g49740 Os05g0572900 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.06 Gene family
LOC_Os05g50460 Os05g0581300 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
LOC_Os07g39910 Os07g0588100 No description available 0.04 Gene family
MA_10214098g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_75255g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
MA_805687g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
MA_83662g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Smo88824 PACid_15409445 35.1.27 not assigned.no ontology.tetratricopeptide... 0.02 Gene family
Solyc01g095160.3.1 Solyc01g095160.3 No description available 0.03 Gene family
Solyc01g097670.3.1 Solyc01g097670.3 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Solyc02g068630.1.1 Solyc02g068630.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
Solyc04g054290.2.1 Solyc04g054290.2 No description available 0.02 Gene family
Solyc11g065250.1.1 Solyc11g065250.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Zm00001d009677 GRMZM2G170941,... 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Zm00001d037830 GRMZM2G462625 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Zm00001d047982 GRMZM2G098869 No description available 0.02 Gene family

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 377 404
IPR002885 Pentatricopeptide_repeat 47 72
IPR002885 Pentatricopeptide_repeat 77 100
IPR002885 Pentatricopeptide_repeat 176 201
IPR002885 Pentatricopeptide_repeat 449 469
IPR002885 Pentatricopeptide_repeat 412 439
IPR002885 Pentatricopeptide_repeat 349 373
IPR002885 Pentatricopeptide_repeat 515 542
IPR002885 Pentatricopeptide_repeat 145 167
IPR002885 Pentatricopeptide_repeat 273 321
IPR032867 DYW_dom 548 671
No external refs found!