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  5. Ore_g35917

Ore_g35917 (PWP2, ATPWP2)


Aliases : PWP2, ATPWP2

Description : SSU processome assembly factor *(UTP1/PWP2) & original description: none


Gene families : OG0005463 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005463_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g35917

Target Alias Description ECC score Gene Family Method Actions
Ehy_g10263 PWP2, ATPWP2 SSU processome assembly factor *(UTP1/PWP2) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01017243001 PWP2, ATPWP2 Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder output from all 47 species
Gb_23048 PWP2, ATPWP2 SSU processome assembly factor (UTP1/PWP2) 0.03 OrthoFinder output from all 47 species
LOC_Os05g44320.1 PWP2, ATPWP2,... SSU processome assembly factor (UTP1/PWP2) 0.03 OrthoFinder output from all 47 species
Mp1g17900.1 PWP2, ATPWP2 SSU processome assembly factor (UTP1/PWP2) 0.02 OrthoFinder output from all 47 species
Pnu_g13064 PWP2, ATPWP2 SSU processome assembly factor *(UTP1/PWP2) & original... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 132 167
IPR001680 WD40_repeat 483 519
IPR001680 WD40_repeat 568 605
IPR001680 WD40_repeat 446 477
IPR001680 WD40_repeat 618 647
No external refs found!