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  5. Ore_g35586

Ore_g35586 (MED33A, RFR1)


Aliases : MED33A, RFR1

Description : component *(MED5/MED24/MED33) of tail module of MEDIATOR transcription co-activator complex & original description: none


Gene families : OG0004136 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004136_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g35586

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00077p00181380 MED33A, RFR1,... RNA biosynthesis.RNA polymerase II-dependent... 0.03 OrthoFinder output from all 47 species
AT2G48110 MED33B, REF4 reduced epidermal fluorescence 4 0.03 OrthoFinder output from all 47 species
Aev_g13995 MED33A, RFR1 component *(MED5/MED24/MED33) of tail module of MEDIATOR... 0.02 OrthoFinder output from all 47 species
Als_g61525 MED33A, RFR1 component *(MED5/MED24/MED33) of tail module of MEDIATOR... 0.07 OrthoFinder output from all 47 species
Aop_g59081 MED33A, RFR1 component *(MED5/MED24/MED33) of tail module of MEDIATOR... 0.03 OrthoFinder output from all 47 species
Cba_g14572 MED33A, RFR1 component *(MED5/MED24/MED33) of tail module of MEDIATOR... 0.02 OrthoFinder output from all 47 species
Cba_g29356 MED33A, RFR1 component *(MED5/MED24/MED33) of tail module of MEDIATOR... 0.02 OrthoFinder output from all 47 species
Ceric.10G044900.1 MED33A, RFR1,... component *(MED5/MED24/MED33) of tail module of MEDIATOR... 0.04 OrthoFinder output from all 47 species
Dac_g21888 MED33A, RFR1 component *(MED5/MED24/MED33) of tail module of MEDIATOR... 0.02 OrthoFinder output from all 47 species
Ehy_g24691 MED33A, RFR1 component *(MED5/MED24/MED33) of tail module of MEDIATOR... 0.04 OrthoFinder output from all 47 species
GSVIVT01011094001 MED33A, RFR1 RNA biosynthesis.RNA polymerase II-dependent... 0.07 OrthoFinder output from all 47 species
GSVIVT01025988001 MED33A, RFR1 RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder output from all 47 species
Mp1g09470.1 MED33A, RFR1 component MED5/MED24/MED33 of tail module of MEDIATOR... 0.03 OrthoFinder output from all 47 species
Nbi_g09393 MED33A, RFR1 component *(MED5/MED24/MED33) of tail module of MEDIATOR... 0.03 OrthoFinder output from all 47 species
Sam_g07989 No alias component *(MED5/MED24/MED33) of tail module of MEDIATOR... 0.04 OrthoFinder output from all 47 species
Smo168663 MED33A, RFR1 RNA biosynthesis.RNA polymerase II-dependent... 0.03 OrthoFinder output from all 47 species
Solyc06g008960.3.1 MED33A, RFR1,... component MED5/MED24/MED33 of tail module of MEDIATOR... 0.02 OrthoFinder output from all 47 species
Tin_g14540 MED33A, RFR1 component *(MED5/MED24/MED33) of tail module of MEDIATOR... 0.06 OrthoFinder output from all 47 species
Zm00001e010985_P001 MED33A, RFR1,... component MED5/MED24/MED33 of tail module of MEDIATOR... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP HCCA
BP GO:0000097 sulfur amino acid biosynthetic process IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0003909 DNA ligase activity IEP HCCA
MF GO:0003910 DNA ligase (ATP) activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006534 cysteine metabolic process IEP HCCA
BP GO:0006535 cysteine biosynthetic process from serine IEP HCCA
BP GO:0006563 L-serine metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008374 O-acyltransferase activity IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
MF GO:0009001 serine O-acetyltransferase activity IEP HCCA
BP GO:0009069 serine family amino acid metabolic process IEP HCCA
BP GO:0009070 serine family amino acid biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016412 serine O-acyltransferase activity IEP HCCA
MF GO:0016413 O-acetyltransferase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP HCCA
BP GO:0019344 cysteine biosynthetic process IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044272 sulfur compound biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!