Zm00001d038874 (GRMZM2G079263)


Aliases : GRMZM2G079263

Description : 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases Pectin lyase-like superfamily protein


Gene families : OG_01_0000383 (Gene family) Phylogenetic Tree(s): OG0000383_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Zm00001d038874
Cluster HCCA cluster: Cluster_83

Target Alias Description ECC score Gene Family Method Actions
AT1G80170 No alias Pectin lyase-like superfamily protein 0.06 Gene family
AT3G07970 QRT2 Pectin lyase-like superfamily protein 0.02 Gene family
AT5G39910 No alias Pectin lyase-like superfamily protein 0.03 Gene family
GSVIVT01017302001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
GSVIVT01032114001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
GSVIVT01032117001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
GSVIVT01032118001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
GSVIVT01033362001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.04 Gene family
GSVIVT01033364001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.04 Gene family
LOC_Os03g59330 Os03g0808000,... 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
MA_219076g0010 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
Smo111266 PACid_15408883 No description available 0.03 Gene family
Solyc01g087280.1.1 Solyc01g087280.1 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
Solyc04g015530.2.1 Solyc04g015530.2 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
Solyc12g009420.2.1 Solyc12g009420.2 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan
BP GO:0005975 carbohydrate metabolic process IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 57 373
No external refs found!