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  5. AMTR_s00095p00019470

AMTR_s00095p00019470 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00095.6

Description : Pentatricopeptide repeat-containing protein At1g80270, mitochondrial OS=Arabidopsis thaliana


Gene families : OG_01_0000235 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000235_tree ,
OG_02_0001224 (LandPlants) Phylogenetic Tree(s): OG_02_0001224_tree ,
OG_03_0002515 (SeedPlants) Phylogenetic Tree(s): OG_03_0002515_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00095p00019470
Cluster HCCA: Cluster_241

Target Alias Description ECC score Gene Family Method Actions
AT1G02370 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT1G60770 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT1G80270 PPR596 PENTATRICOPEPTIDE REPEAT 596 0.06 Archaeplastida
AT4G01990 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT4G02820 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
GSVIVT01002065001 No alias Pentatricopeptide repeat-containing protein At4g21705,... 0.04 Archaeplastida
GSVIVT01006654001 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.06 Archaeplastida
GSVIVT01031246001 No alias Pentatricopeptide repeat-containing protein At4g01990,... 0.04 Archaeplastida
GSVIVT01033642001 No alias Pentatricopeptide repeat-containing protein At1g80270,... 0.05 Archaeplastida
Gb_27873 No alias RNA editing factor (POCO) 0.05 Archaeplastida
LOC_Os01g19548.1 No alias Pentatricopeptide repeat-containing protein At1g02370,... 0.02 Archaeplastida
LOC_Os04g25410.1 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.04 Archaeplastida
LOC_Os04g37720.1 No alias Pentatricopeptide repeat-containing protein At5g09450,... 0.02 Archaeplastida
LOC_Os12g07260.1 No alias RNA editing factor (POCO) 0.08 Archaeplastida
LOC_Os12g34340.1 No alias Pentatricopeptide repeat-containing protein At4g02820,... 0.03 Archaeplastida
MA_492314g0010 No alias RNA editing factor (POCO) 0.07 Archaeplastida
MA_7558g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.09 Archaeplastida
Pp3c18_8600V3.1 No alias PENTATRICOPEPTIDE REPEAT 596 0.04 Archaeplastida
Pp3c21_11730V3.1 No alias PENTATRICOPEPTIDE REPEAT 596 0.03 Archaeplastida
Solyc01g079320.4.1 No alias Pentatricopeptide repeat-containing protein At1g02370,... 0.02 Archaeplastida
Solyc02g078330.3.1 No alias Pentatricopeptide repeat-containing protein At2g20710,... 0.03 Archaeplastida
Solyc06g005140.3.1 No alias Pentatricopeptide repeat-containing protein At4g02820,... 0.04 Archaeplastida
Solyc07g054100.3.1 No alias Pentatricopeptide repeat-containing protein At2g20710,... 0.03 Archaeplastida
Solyc07g063220.4.1 No alias Pentatricopeptide repeat-containing protein At4g21705,... 0.02 Archaeplastida
Solyc11g006380.2.1 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.07 Archaeplastida
Solyc12g020050.2.1 No alias RNA editing factor (POCO) 0.05 Archaeplastida
Zm00001e007372_P001 No alias Pentatricopeptide repeat-containing protein At1g02150... 0.02 Archaeplastida
Zm00001e017396_P001 No alias RNA editing factor (POCO) 0.06 Archaeplastida
Zm00001e025470_P001 No alias RNA editing factor (POCO) 0.07 Archaeplastida
Zm00001e026211_P002 No alias Pentatricopeptide repeat-containing protein At1g02370,... 0.07 Archaeplastida
Zm00001e036620_P001 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.04 Archaeplastida
AT1G80270 PPR596 PENTATRICOPEPTIDE REPEAT 596 0.06 LandPlants
GSVIVT01033642001 No alias Pentatricopeptide repeat-containing protein At1g80270,... 0.06 LandPlants
Gb_27873 No alias RNA editing factor (POCO) 0.04 LandPlants
LOC_Os12g07260.1 No alias RNA editing factor (POCO) 0.08 LandPlants
MA_492314g0010 No alias RNA editing factor (POCO) 0.07 LandPlants
Pp3c18_8600V3.1 No alias PENTATRICOPEPTIDE REPEAT 596 0.04 LandPlants
Pp3c21_11730V3.1 No alias PENTATRICOPEPTIDE REPEAT 596 0.03 LandPlants
Smo402234 No alias Pentatricopeptide repeat-containing protein At1g80270,... 0.01 LandPlants
Smo406783 No alias Pentatricopeptide repeat-containing protein At1g80270,... 0.02 LandPlants
Solyc12g020050.2.1 No alias RNA editing factor (POCO) 0.06 LandPlants
Zm00001e017396_P001 No alias RNA editing factor (POCO) 0.05 LandPlants
Zm00001e025470_P001 No alias RNA editing factor (POCO) 0.06 LandPlants
AT1G80270 PPR596 PENTATRICOPEPTIDE REPEAT 596 0.06 SeedPlants
GSVIVT01033642001 No alias Pentatricopeptide repeat-containing protein At1g80270,... 0.06 SeedPlants
Gb_27873 No alias RNA editing factor (POCO) 0.03 SeedPlants
LOC_Os12g07260.1 No alias RNA editing factor (POCO) 0.08 SeedPlants
MA_492314g0010 No alias RNA editing factor (POCO) 0.06 SeedPlants
Solyc12g020050.2.1 No alias RNA editing factor (POCO) 0.06 SeedPlants
Zm00001e017396_P001 No alias RNA editing factor (POCO) 0.05 SeedPlants
Zm00001e025470_P001 No alias RNA editing factor (POCO) 0.06 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 438 459
IPR002885 Pentatricopeptide_repeat 549 577
IPR002885 Pentatricopeptide_repeat 261 291
IPR002885 Pentatricopeptide_repeat 502 524
IPR002885 Pentatricopeptide_repeat 469 497
No external refs found!