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Aliases : ATCOL4, COL4
Description : not classified & original description: none
Gene families : OG0001141 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001141_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Ore_g34612 | |
| Cluster | HCCA: Cluster_123 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00006p00262710 | COL2, ATCOL2,... | RNA biosynthesis.transcriptional activation.C2C2... | 0.03 | OrthoFinder output from all 47 species | |
| AT2G24790 | COL3, ATCOL3 | CONSTANS-like 3 | 0.02 | OrthoFinder output from all 47 species | |
| AT3G02380 | COL2, ATCOL2 | CONSTANS-like 2 | 0.03 | OrthoFinder output from all 47 species | |
| AT5G15850 | COL1, ATCOL1 | CONSTANS-like 1 | 0.03 | OrthoFinder output from all 47 species | |
| AT5G57660 | ATCOL5, COL5 | CONSTANS-like 5 | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g024051 | COL2, ATCOL2 | floral promoter *(CONSTANS) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0006.g009656 | ATCOL4, COL4 | floral promoter *(CONSTANS) & original description: CDS=186-1232 | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g04402 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Cre06.g278159 | ATCOL5, COL5 | Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana | 0.01 | OrthoFinder output from all 47 species | |
| Ehy_g03545 | COL3, ATCOL3 | floral promoter *(CONSTANS) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g11774 | COL3, ATCOL3 | floral promoter *(CONSTANS) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01036037001 | ATCOL4, COL4 | RNA biosynthesis.transcriptional activation.C2C2... | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01036499001 | COL2, ATCOL2 | RNA biosynthesis.transcriptional activation.C2C2... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os02g08150.1 | ATCOL5, COL5,... | Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os02g39710.1 | ATCOL5, COL5,... | transcription factor (BBX-CO) | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os04g42020.1 | ATCOL5, COL5,... | transcription factor (BBX-CO) | 0.06 | OrthoFinder output from all 47 species | |
| LOC_Os06g16370.1 | COL2, ATCOL2,... | transcription factor (BBX-CO) | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os06g44450.1 | ATCOL5, COL5,... | Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis... | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os10g41100.1 | ATCOL5, COL5,... | Transcription factor GHD7 OS=Oryza sativa subsp.... | 0.02 | OrthoFinder output from all 47 species | |
| Len_g17115 | COL1, ATCOL1 | floral promoter *(CONSTANS) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g05304 | ATCOL4, COL4 | floral promoter *(CONSTANS) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Mp8g13470.1 | ATCOL4, COL4 | transcription factor (BBX-CO) | 0.02 | OrthoFinder output from all 47 species | |
| Pnu_g10567 | COL1, ATCOL1 | floral promoter *(CONSTANS) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g48282 | COL1, ATCOL1 | floral promoter *(CONSTANS) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g06077 | No alias | floral promoter *(CONSTANS) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g26599 | No alias | floral promoter *(CONSTANS) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e002319_P001 | ATCOL4, COL4,... | Transcription factor GHD7 OS=Oryza sativa subsp.... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e007691_P001 | Zm00001e007691 | transcription factor (BBX-CO) | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e013804_P001 | ATCOL5, COL5,... | Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis... | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e022933_P001 | COL3, ATCOL3,... | transcription factor (BBX-CO) | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e037706_P002 | ATCOL5, COL5,... | Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e041152_P001 | ATCOL5, COL5,... | transcription factor (BBX-CO) | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005488 | binding | IEP | HCCA |
| MF | GO:0005507 | copper ion binding | IEP | HCCA |
| MF | GO:0008131 | primary amine oxidase activity | IEP | HCCA |
| BP | GO:0009308 | amine metabolic process | IEP | HCCA |
| MF | GO:0016491 | oxidoreductase activity | IEP | HCCA |
| MF | GO:0016638 | oxidoreductase activity, acting on the CH-NH2 group of donors | IEP | HCCA |
| MF | GO:0016641 | oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| MF | GO:0043169 | cation binding | IEP | HCCA |
| MF | GO:0046872 | metal ion binding | IEP | HCCA |
| MF | GO:0046914 | transition metal ion binding | IEP | HCCA |
| MF | GO:0046983 | protein dimerization activity | IEP | HCCA |
| MF | GO:0048038 | quinone binding | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |