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  5. Ore_g33221

Ore_g33221


Description : component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination heterodimer & original description: none


Gene families : OG0001881 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001881_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g33221

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00202840 evm_27.TU.AmTr_v1... DNA damage response.BRCA1–BARD1 DNA-damage response... 0.03 OrthoFinder output from all 47 species
AMTR_s00066p00084950 evm_27.TU.AmTr_v1... ATPase family AAA domain-containing protein At1g05910... 0.02 OrthoFinder output from all 47 species
AT3G15120 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 OrthoFinder output from all 47 species
Adi_g060029 No alias component *(BRAT1) of anti-silencing regulator complex &... 0.05 OrthoFinder output from all 47 species
Adi_g117179 No alias component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.03 OrthoFinder output from all 47 species
Aev_g10813 No alias component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.03 OrthoFinder output from all 47 species
Aev_g11042 No alias component *(BRAT1) of anti-silencing regulator complex &... 0.04 OrthoFinder output from all 47 species
Ala_g18310 No alias component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.06 OrthoFinder output from all 47 species
Aspi01Gene22598.t1 Aspi01Gene22598 component *(BRP1) of anti-silencing regulator complex &... 0.06 OrthoFinder output from all 47 species
Aspi01Gene22599.t1 Aspi01Gene22599 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene60413.t1 Aspi01Gene60413 component *(BRAT1) of anti-silencing regulator complex &... 0.03 OrthoFinder output from all 47 species
Azfi_s0006.g010210 No alias component *(BRAT1) of anti-silencing regulator complex &... 0.03 OrthoFinder output from all 47 species
Dcu_g04982 No alias component *(BRAT1) of anti-silencing regulator complex &... 0.03 OrthoFinder output from all 47 species
Dcu_g38475 No alias component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.02 OrthoFinder output from all 47 species
Ehy_g11671 No alias component *(BRAT1) of anti-silencing regulator complex &... 0.02 OrthoFinder output from all 47 species
Ehy_g20668 No alias component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.02 OrthoFinder output from all 47 species
GSVIVT01014274001 No alias DNA damage response.BRCA1–BARD1 DNA-damage response... 0.07 OrthoFinder output from all 47 species
Gb_05160 No alias ATPase family AAA domain-containing protein At1g05910... 0.02 OrthoFinder output from all 47 species
Gb_11471 No alias component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage... 0.04 OrthoFinder output from all 47 species
LOC_Os01g47800.1 LOC_Os01g47800 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
LOC_Os09g33980.1 LOC_Os09g33980 ATPase family AAA domain-containing protein At1g05910... 0.02 OrthoFinder output from all 47 species
Len_g11424 No alias component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.06 OrthoFinder output from all 47 species
MA_10425878g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_10425878g0020 No alias ATPase family AAA domain-containing protein At1g05910... 0.05 OrthoFinder output from all 47 species
MA_10432357g0010 No alias ATPase family AAA domain-containing protein At1g05910... 0.05 OrthoFinder output from all 47 species
Mp2g00420.1 No alias ATPase family AAA domain-containing protein At1g05910... 0.03 OrthoFinder output from all 47 species
Msp_g15700 No alias component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.03 OrthoFinder output from all 47 species
Ppi_g49222 No alias component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0154.g023552 No alias component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.03 OrthoFinder output from all 47 species
Sam_g48914 No alias component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.02 OrthoFinder output from all 47 species
Smo170139 No alias ATPase family AAA domain-containing protein At1g05910... 0.07 OrthoFinder output from all 47 species
Solyc07g062770.2.1 Solyc07g062770 component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage... 0.07 OrthoFinder output from all 47 species
Spa_g08442 No alias component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination... 0.02 OrthoFinder output from all 47 species
Spa_g52445 No alias component *(BRAT1) of anti-silencing regulator complex &... 0.02 OrthoFinder output from all 47 species
Tin_g01284 No alias component *(BRAT1) of anti-silencing regulator complex &... 0.02 OrthoFinder output from all 47 species
Zm00001e034695_P003 Zm00001e034695 ATPase family AAA domain-containing protein At1g05910... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATP hydrolysis activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 619 754
IPR041569 AAA_lid_3 783 810
No external refs found!