Ore_g32531 (SIGB, SIG2, SIGA, SIG1, RPOD1)

Aliases : SIGB, SIG2, SIGA, SIG1, RPOD1

Description : basal Sigma-type transcription factor & original description: none

Gene families : OG0000565 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000565_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ore_g32531
Cluster	HCCA: Cluster_127

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00009p00072720	SIGF, SIG6,...	RNA biosynthesis.organelle...	0.06	OrthoFinder output from all 47 species
AMTR_s00011p00258380	ATSIG1, SIGB,...	RNA biosynthesis.organelle...	0.03	OrthoFinder output from all 47 species
AMTR_s00011p00266100	SIGB, SIG2,...	RNA biosynthesis.organelle...	0.06	OrthoFinder output from all 47 species
AMTR_s00056p00209700	SIGC, SIG3,...	RNA biosynthesis.organelle...	0.02	OrthoFinder output from all 47 species
AT1G08540	ATSIG1, SIGB,...	RNApolymerase sigma subunit 2	0.04	OrthoFinder output from all 47 species
AT1G64860	SIGB, SIG2,...	sigma factor A	0.03	OrthoFinder output from all 47 species
AT2G36990	SIGF, SIG6,...	RNApolymerase sigma-subunit F	0.03	OrthoFinder output from all 47 species
AT3G53920	SIGC, SIG3	RNApolymerase sigma-subunit C	0.03	OrthoFinder output from all 47 species
AT5G13730	SIGD, SIG4	sigma factor 4	0.04	OrthoFinder output from all 47 species
Adi_g013131	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.05	OrthoFinder output from all 47 species
Adi_g022157	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.08	OrthoFinder output from all 47 species
Adi_g088986	ATSIG1, SIGB,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g02431	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ala_g12116	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.06	OrthoFinder output from all 47 species
Ala_g13776	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Ala_g19265	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.05	OrthoFinder output from all 47 species
Als_g16201	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Als_g20576	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Als_g27390	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.05	OrthoFinder output from all 47 species
Als_g61402	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Aob_g09016	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.06	OrthoFinder output from all 47 species
Aob_g09018	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Aob_g09050	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.06	OrthoFinder output from all 47 species
Aob_g16433	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Aop_g04446	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Aop_g19589	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Aspi01Gene21912.t1	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Aspi01Gene43773.t1	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.05	OrthoFinder output from all 47 species
Aspi01Gene43774.t1	ATSIG1, SIGB,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene69203.t1	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Azfi_s0001.g000670	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.07	OrthoFinder output from all 47 species
Cba_g03997	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Ceric.02G009200.1	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ceric.02G083900.1	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.07	OrthoFinder output from all 47 species
Ceric.12G082200.1	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Cre03.g194950	ATSIG1, SIGB,...	RNA biosynthesis.organelle...	0.01	OrthoFinder output from all 47 species
Dac_g03371	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Dac_g09532	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Dac_g10853	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Dac_g16208	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Dcu_g03021	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Dcu_g05693	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.05	OrthoFinder output from all 47 species
Dde_g23470	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Dde_g24733	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ehy_g04026	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ehy_g05906	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ehy_g06928	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Ehy_g07794	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.06	OrthoFinder output from all 47 species
Ehy_g08589	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ehy_g12113	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.05	OrthoFinder output from all 47 species
Ehy_g14118	SIGF, SIG6,...	basal Sigma-type transcription factor & original...	0.05	OrthoFinder output from all 47 species
GSVIVT01024261001	SIGB, SIG2,...	RNA biosynthesis.organelle...	0.07	OrthoFinder output from all 47 species
GSVIVT01025717001	SIGF, SIG6,...	RNA biosynthesis.organelle...	0.03	OrthoFinder output from all 47 species
GSVIVT01032193001	SIGD, SIG4	RNA biosynthesis.organelle...	0.04	OrthoFinder output from all 47 species
GSVIVT01035330001	SIGC, SIG3	RNA biosynthesis.organelle...	0.05	OrthoFinder output from all 47 species
Gb_23845	ATSIG1, SIGB,...	basal transcription factor (Sigma)	0.03	OrthoFinder output from all 47 species
Gb_37602	ATSIG1, SIGB,...	basal transcription factor (Sigma)	0.05	OrthoFinder output from all 47 species
LOC_Os08g14450.1	SIGF, SIG6,...	basal transcription factor (Sigma)	0.07	OrthoFinder output from all 47 species
LOC_Os11g26160.1	ATSIG1, SIGB,...	basal transcription factor (Sigma)	0.06	OrthoFinder output from all 47 species
Lfl_g03177	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
MA_10362938g0010	SIGB, SIG2,...	basal transcription factor (Sigma)	0.01	OrthoFinder output from all 47 species
MA_10429585g0010	ATSIG1, SIGB,...	basal transcription factor (Sigma)	0.05	OrthoFinder output from all 47 species
Mp4g13380.1	ATSIG1, SIGB,...	basal transcription factor (Sigma)	0.02	OrthoFinder output from all 47 species
Mp7g15030.1	SIGB, SIG2,...	basal transcription factor (Sigma)	0.06	OrthoFinder output from all 47 species
Msp_g07421	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Msp_g15805	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Msp_g19924	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Nbi_g09351	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Nbi_g13789	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Nbi_g17161	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Nbi_g21262	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Ore_g25320	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Pir_g00589	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Pir_g64419	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ppi_g06448	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ppi_g07492	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0017.g007071	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0198.g025553	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Sam_g19255	No alias	basal Sigma-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Sam_g24938	No alias	basal Sigma-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Sam_g38609	No alias	basal Sigma-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Smo117159	ATSIG1, SIGB,...	RNA biosynthesis.organelle...	0.02	OrthoFinder output from all 47 species
Solyc01g081490.3.1	ATSIG1, SIGB,...	basal transcription factor (Sigma)	0.05	OrthoFinder output from all 47 species
Solyc03g097320.3.1	SIGB, SIG2,...	basal transcription factor (Sigma)	0.04	OrthoFinder output from all 47 species
Solyc06g072710.3.1	SIGB, SIG2,...	basal transcription factor (Sigma)	0.03	OrthoFinder output from all 47 species
Solyc08g065970.3.1	SIGC, SIG3,...	basal transcription factor (Sigma)	0.02	OrthoFinder output from all 47 species
Solyc09g008040.3.1	SIGF, SIG6,...	basal transcription factor (Sigma)	0.03	OrthoFinder output from all 47 species
Spa_g13112	SIGB, SIG2,...	basal Sigma-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Spa_g16166	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Tin_g12918	ATSIG1, SIGB,...	basal Sigma-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Zm00001e001198_P005	ATSIG1, SIGB,...	basal transcription factor (Sigma)	0.04	OrthoFinder output from all 47 species
Zm00001e011616_P008	SIGF, SIG6,...	basal transcription factor (Sigma)	0.03	OrthoFinder output from all 47 species
Zm00001e021420_P001	ATSIG1, SIGB,...	basal transcription factor (Sigma)	0.07	OrthoFinder output from all 47 species
Zm00001e021683_P001	SIGB, SIG2,...	basal transcription factor (Sigma)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006352	DNA-templated transcription initiation	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016987	sigma factor activity	IEA	Interproscan
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0005216	monoatomic ion channel activity	IEP	HCCA
MF	GO:0005261	monoatomic cation channel activity	IEP	HCCA
BP	GO:0006163	purine nucleotide metabolic process	IEP	HCCA
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	HCCA
BP	GO:0006754	ATP biosynthetic process	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
BP	GO:0009117	nucleotide metabolic process	IEP	HCCA
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009142	nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009145	purine nucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009152	purine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009199	ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009201	ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009206	purine ribonucleoside triphosphate biosynthetic process	IEP	HCCA
BP	GO:0009259	ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
MF	GO:0010181	FMN binding	IEP	HCCA
MF	GO:0010277	chlorophyllide a oxygenase [overall] activity	IEP	HCCA
MF	GO:0015078	proton transmembrane transporter activity	IEP	HCCA
MF	GO:0015252	proton channel activity	IEP	HCCA
MF	GO:0015267	channel activity	IEP	HCCA
BP	GO:0015986	proton motive force-driven ATP synthesis	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
MF	GO:0016701	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen	IEP	HCCA
MF	GO:0016703	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases)	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016854	racemase and epimerase activity	IEP	HCCA
MF	GO:0016857	racemase and epimerase activity, acting on carbohydrates and derivatives	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
BP	GO:0019693	ribose phosphate metabolic process	IEP	HCCA
MF	GO:0022803	passive transmembrane transporter activity	IEP	HCCA
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
CC	GO:0033178	proton-transporting two-sector ATPase complex, catalytic domain	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
CC	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)	IEP	HCCA
BP	GO:0046034	ATP metabolic process	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
MF	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism	IEP	HCCA
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	HCCA
BP	GO:0072521	purine-containing compound metabolic process	IEP	HCCA
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007627	RNA_pol_sigma70_r2	282	348
IPR007630	RNA_pol_sigma70_r4	452	504
IPR009042	RNA_pol_sigma70_r1_2	206	232

External Links

No external refs found!

Ore_g32531 (SIGB, SIG2, SIGA, SIG1, RPOD1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation