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  5. Ore_g32149

Ore_g32149 (PSB28)


Aliases : PSB28

Description : protein involved in PS-II assembly *(Psb28) & original description: none


Gene families : OG0005594 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005594_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g32149
Cluster HCCA: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00039p00160690 PSB28,... Photosynthesis.photophosphorylation.photosystem... 0.06 OrthoFinder output from all 47 species
AT4G28660 PSB28 photosystem II reaction center PSB28 protein 0.09 OrthoFinder output from all 47 species
Aev_g03543 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.09 OrthoFinder output from all 47 species
Ala_g08604 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.1 OrthoFinder output from all 47 species
Als_g06924 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.1 OrthoFinder output from all 47 species
Aob_g06334 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.02 OrthoFinder output from all 47 species
Aop_g06562 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.04 OrthoFinder output from all 47 species
Cba_g20107 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.02 OrthoFinder output from all 47 species
Ceric.07G032000.1 PSB28, Ceric.07G032000 protein involved in PS-II assembly *(Psb28) & original... 0.05 OrthoFinder output from all 47 species
Cre10.g440450 PSB28 Photosynthesis.photophosphorylation.photosystem... 0.05 OrthoFinder output from all 47 species
Dac_g09174 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.07 OrthoFinder output from all 47 species
Dcu_g46324 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.09 OrthoFinder output from all 47 species
Ehy_g01982 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.08 OrthoFinder output from all 47 species
GSVIVT01028434001 PSB28 Photosynthesis.photophosphorylation.photosystem... 0.04 OrthoFinder output from all 47 species
Gb_39548 PSB28 Psb28 protein involved in PS-II assembly 0.03 OrthoFinder output from all 47 species
LOC_Os01g71190.1 PSB28, LOC_Os01g71190 Psb28 protein involved in PS-II assembly 0.04 OrthoFinder output from all 47 species
Len_g02114 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.04 OrthoFinder output from all 47 species
Lfl_g34843 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.03 OrthoFinder output from all 47 species
MA_18349g0010 PSB28 Psb28 protein involved in PS-II assembly 0.08 OrthoFinder output from all 47 species
Mp2g14630.1 PSB28 Psb28 protein involved in PS-II assembly 0.08 OrthoFinder output from all 47 species
Msp_g12017 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.06 OrthoFinder output from all 47 species
Nbi_g14351 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.04 OrthoFinder output from all 47 species
Ppi_g14394 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.06 OrthoFinder output from all 47 species
Sam_g09153 No alias protein involved in PS-II assembly *(Psb28) & original... 0.02 OrthoFinder output from all 47 species
Solyc09g064500.3.1 PSB28, Solyc09g064500 Psb28 protein involved in PS-II assembly 0.08 OrthoFinder output from all 47 species
Spa_g21623 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.05 OrthoFinder output from all 47 species
Tin_g00351 PSB28 protein involved in PS-II assembly *(Psb28) & original... 0.06 OrthoFinder output from all 47 species
Zm00001e018703_P001 PSB28, Zm00001e018703 Psb28 protein involved in PS-II assembly 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0009523 photosystem II IEA Interproscan
CC GO:0009654 photosystem II oxygen evolving complex IEA Interproscan
BP GO:0015979 photosynthesis IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEP HCCA
MF GO:0008942 nitrite reductase [NAD(P)H] activity IEP HCCA
MF GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
MF GO:0046857 oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
MF GO:0098809 nitrite reductase activity IEP HCCA
InterPro domains Description Start Stop
IPR005610 PSII_Psb28_class-1 80 185
No external refs found!