1. Home
  2. Species
  3. Ophioglossum reticulatum
  4. Sequence
  5. Ore_g30371

Ore_g30371


Description : not classified & original description: none


Gene families : OG0002119 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002119_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g30371

Target Alias Description ECC score Gene Family Method Actions
AT3G06430 EMB2750 Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT3G53170 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G48730 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
Als_g33753 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0174.g055903 EMB2453, ATPPR5 not classified & original description: CDS=133-1563 0.03 OrthoFinder output from all 47 species
Ceric.1Z174800.1 Ceric.1Z174800 not classified & original description: pacid=50628243... 0.03 OrthoFinder output from all 47 species
Dcu_g02809 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os02g51480.1 EMB2453, ATPPR5,... Pentatricopeptide repeat-containing protein PPR5... 0.03 OrthoFinder output from all 47 species
LOC_Os06g07550.1 LOC_Os06g07550 Pentatricopeptide repeat-containing protein At5g48730,... 0.03 OrthoFinder output from all 47 species
MA_12518g0010 EMB2453, ATPPR5 Pentatricopeptide repeat-containing protein PPR5... 0.02 OrthoFinder output from all 47 species
Ppi_g11535 EMB2453, ATPPR5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0080.g017959 EMB2453, ATPPR5 not classified & original description: CDS=1-1101 0.03 OrthoFinder output from all 47 species
Solyc04g054270.4.1 EMB2453, ATPPR5,... Pentatricopeptide repeat-containing protein PPR5... 0.02 OrthoFinder output from all 47 species
Solyc08g045780.4.1 Solyc08g045780 Pentatricopeptide repeat-containing protein At3g53170... 0.03 OrthoFinder output from all 47 species
Spa_g12418 EMB2453, ATPPR5 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e023883_P001 EMB2453, ATPPR5,... Pentatricopeptide repeat-containing protein PPR5,... 0.03 OrthoFinder output from all 47 species
Zm00001e031052_P001 Zm00001e031052 Pentatricopeptide repeat-containing protein At5g48730,... 0.04 OrthoFinder output from all 47 species
Zm00001e032726_P001 EMB2750, Zm00001e032726 Pentatricopeptide repeat-containing protein At3g06430,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 98 145
IPR002885 Pentatricopeptide_repeat 240 289
IPR002885 Pentatricopeptide_repeat 311 357
IPR002885 Pentatricopeptide_repeat 169 216
No external refs found!