Ore_g30357 (ARF16)


Aliases : ARF16

Description : ARF-type transcription factor & original description: none


Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g30357

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00200760 ARF4,... RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
AT1G30330 ARF6 auxin response factor 6 0.02 OrthoFinder output from all 47 species
AT1G35240 ARF20 auxin response factor 20 0.04 OrthoFinder output from all 47 species
AT2G33860 ARF3, ETT Transcriptional factor B3 family protein /... 0.02 OrthoFinder output from all 47 species
AT4G23980 ARF9 auxin response factor 9 0.02 OrthoFinder output from all 47 species
AT5G37020 ARF8, ATARF8 auxin response factor 8 0.03 OrthoFinder output from all 47 species
AT5G60450 ARF4 auxin response factor 4 0.04 OrthoFinder output from all 47 species
ATMG00940 ORF164 DNA binding 0.03 OrthoFinder output from all 47 species
Adi_g089250 ARF6 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g02130 ARF16 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g27076 ARF4 transcriptional repressor *(IAA/AUX) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g32218 ARF16 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g13618 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene11714.t1 ARF6, Aspi01Gene11714 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene38983.t1 ARF16, Aspi01Gene38983 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene61150.t1 ARF16, Aspi01Gene61150 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0433.g069577 ARF6 ARF-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.18G034300.1 ARF16, Ceric.18G034300 ARF-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.30G022300.1 ARF6, Ceric.30G022300 ARF-type transcription factor & original description:... 0.05 OrthoFinder output from all 47 species
Dac_g07132 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g19338 ARF16 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g08681 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g08691 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g12286 ARF10 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01021553001 ARF6 RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
GSVIVT01032251001 ARF19, IAA22, ARF11 RNA biosynthesis.transcriptional activation.B3... 0.04 OrthoFinder output from all 47 species
LOC_Os04g43910.1 ARF10, LOC_Os04g43910 transcription factor (ARF) 0.05 OrthoFinder output from all 47 species
LOC_Os04g56850.1 MP, IAA24, ARF5,... transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Msp_g13825 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g19455 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0024.g008995 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0032.g010740 TIR5, MSG1,... ARF-type transcription factor & original description: CDS=1-2400 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0090.g018749 ARF10 not classified & original description: CDS=44-817 0.03 OrthoFinder output from all 47 species
Sam_g16405 No alias ARF-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g19673 No alias ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g39105 No alias ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Smo115320 ARF6 Auxin response factor 25 OS=Oryza sativa subsp. japonica 0.03 OrthoFinder output from all 47 species
Solyc08g008380.4.1 ARF9, Solyc08g008380 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Spa_g39677 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e015164_P002 ARF10, Zm00001e015164 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Zm00001e030290_P005 ARF16, Zm00001e030290 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Zm00001e032423_P002 ARF3, ETT, Zm00001e032423 transcription factor (ARF) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
BP GO:0009725 response to hormone IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 139 240
IPR010525 ARF_dom 321 404
No external refs found!