Ore_g30282

Description : not classified & original description: none

Gene families : OG0001618 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001618_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ore_g30282

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00107p00082420	evm_27.TU.AmTr_v1...	DEAD-box ATP-dependent RNA helicase 26 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
AT1G63250	No alias	DEA(D/H)-box RNA helicase family protein	0.04	OrthoFinder output from all 47 species
AT5G08610	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.03	OrthoFinder output from all 47 species
AT5G08620	ATRH25, STRS2	DEA(D/H)-box RNA helicase family protein	0.03	OrthoFinder output from all 47 species
Aev_g18916	No alias	mRNA helicase *(RH31) & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g06941	No alias	mRNA helicase *(RH31) & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g13231	No alias	mRNA helicase *(RH31) & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene05460.t1	Aspi01Gene05460	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cre16.g661900	No alias	DEAD-box ATP-dependent RNA helicase 26 OS=Arabidopsis thaliana	0.01	OrthoFinder output from all 47 species
Dde_g19403	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01019804001	No alias	DEAD-box ATP-dependent RNA helicase 48 OS=Oryza sativa...	0.04	OrthoFinder output from all 47 species
Gb_08014	No alias	DEAD-box ATP-dependent RNA helicase 31 OS=Arabidopsis...	0.01	OrthoFinder output from all 47 species
LOC_Os06g33520.1	LOC_Os06g33520	DEAD-box ATP-dependent RNA helicase 31 OS=Oryza sativa...	0.03	OrthoFinder output from all 47 species
MA_10432294g0010	No alias	DEAD-box ATP-dependent RNA helicase 26 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Mp7g07740.1	No alias	Probable DEAD-box ATP-dependent RNA helicase 48...	0.03	OrthoFinder output from all 47 species
Solyc12g056340.2.1	Solyc12g056340	Probable DEAD-box ATP-dependent RNA helicase 48...	0.02	OrthoFinder output from all 47 species
Zm00001e020446_P003	Zm00001e020446	DEAD-box ATP-dependent RNA helicase 26 OS=Oryza sativa...	0.02	OrthoFinder output from all 47 species
Zm00001e037076_P003	Zm00001e037076	DEAD-box ATP-dependent RNA helicase 31 OS=Oryza sativa...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003684	damaged DNA binding	IEP	HCCA
MF	GO:0003909	DNA ligase activity	IEP	HCCA
MF	GO:0003910	DNA ligase (ATP) activity	IEP	HCCA
MF	GO:0004843	cysteine-type deubiquitinase activity	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006310	DNA recombination	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006950	response to stress	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
MF	GO:0008234	cysteine-type peptidase activity	IEP	HCCA
BP	GO:0016579	protein deubiquitination	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	IEP	HCCA
MF	GO:0019783	ubiquitin-like protein peptidase activity	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0050896	response to stimulus	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0101005	deubiquitinase activity	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	360	536

External Links

No external refs found!

Ore_g30282

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation