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  5. Ore_g30275

Ore_g30275 (AXR6, ATCUL1, CUL1)


Aliases : AXR6, ATCUL1, CUL1

Description : scaffold component *(CUL1) of SCF E3 ubiquitin ligase complexes & original description: none


Gene families : OG0001888 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001888_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g30275

Target Alias Description ECC score Gene Family Method Actions
Adi_g087062 AXR6, ATCUL1, CUL1 scaffold component *(CUL1) of SCF E3 ubiquitin ligase... 0.05 OrthoFinder output from all 47 species
Als_g34097 AXR6, ATCUL1, CUL1 scaffold component *(CUL1) of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Aop_g01815 AXR6, ATCUL1, CUL1 scaffold component *(CUL1) of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Cba_g24807 AXR6, ATCUL1, CUL1 scaffold component *(CUL1) of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Ceric.27G015900.1 AXR6, ATCUL1,... scaffold component *(CUL1) of SCF E3 ubiquitin ligase... 0.04 OrthoFinder output from all 47 species
Ceric.28G004800.1 AXR6, ATCUL1,... scaffold component *(CUL1) of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020563.191 AXR6, ATCUL1, CUL1 Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
Dcu_g04834 AXR6, ATCUL1, CUL1 scaffold component *(CUL1) of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
GSVIVT01010966001 AXR6, ATCUL1, CUL1 Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
Gb_16689 AXR6, ATCUL1, CUL1 scaffold component CUL1/CUL2 of SKP1-CUL1-FBX (SCF) E3... 0.02 OrthoFinder output from all 47 species
Len_g59431 AXR6, ATCUL1, CUL1 scaffold component *(CUL1) of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Mp8g03110.1 AXR6, ATCUL1, CUL1 scaffold component CUL1/CUL2 of SKP1-CUL1-FBX (SCF) E3... 0.03 OrthoFinder output from all 47 species
Msp_g06115 AXR6, ATCUL1, CUL1 scaffold component *(CUL1) of SCF E3 ubiquitin ligase... 0.04 OrthoFinder output from all 47 species
Sam_g12468 No alias scaffold component *(CUL1) of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Solyc01g067100.4.1 AXR6, ATCUL1,... scaffold component CUL1/CUL2 of SKP1-CUL1-FBX (SCF) E3... 0.02 OrthoFinder output from all 47 species
Zm00001e027502_P001 AXR6, ATCUL1,... scaffold component CUL1/CUL2 of SKP1-CUL1-FBX (SCF) E3... 0.02 OrthoFinder output from all 47 species
Zm00001e040431_P004 AXR6, ATCUL1,... scaffold component CUL1/CUL2 of SKP1-CUL1-FBX (SCF) E3... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA Interproscan
MF GO:0031625 ubiquitin protein ligase binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0032182 ubiquitin-like protein binding IEP HCCA
MF GO:0043130 ubiquitin binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
InterPro domains Description Start Stop
IPR001373 Cullin_N 24 647
IPR019559 Cullin_neddylation_domain 674 736
No external refs found!