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  5. Ore_g29827

Ore_g29827 (TIR1)


Aliases : TIR1

Description : not classified & original description: none


Gene families : OG0000211 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000211_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g29827

Target Alias Description ECC score Gene Family Method Actions
Adi_g112627 TIR1 substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)... 0.02 OrthoFinder output from all 47 species
Aob_g36472 COI1 component *(COI) of jasmonic acid receptor complex &... 0.03 OrthoFinder output from all 47 species
Ceric.17G050600.1 COI1, Ceric.17G050600 component *(COI) of jasmonic acid receptor complex &... 0.03 OrthoFinder output from all 47 species
MA_10428988g0010 COI1 component COI of jasmonic acid receptor complex 0.02 OrthoFinder output from all 47 species
MA_14836g0010 TIR1 component TIR1/AFB of auxin receptor complex. component... 0.03 OrthoFinder output from all 47 species
Spa_g05740 COI1 component *(COI) of jasmonic acid receptor complex &... 0.03 OrthoFinder output from all 47 species
Tin_g25431 AFB1, ATGRH1, GRH1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e001167_P003 COI1, Zm00001e001167 component COI of jasmonic acid receptor complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005516 calmodulin binding IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
InterPro domains Description Start Stop
IPR041101 Transp_inhibit 59 105
IPR041567 COI1_F-box 1 40
No external refs found!