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  5. Ore_g29088

Ore_g29088 (MYB1, AtMYB1)


Aliases : MYB1, AtMYB1

Description : MYB class-R2R3 subgroup-22/23 transcription factor & original description: none


Gene families : OG0000080 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000080_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g29088
Cluster HCCA: Cluster_33

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00263240 MYB3R-1,... RNA biosynthesis.transcriptional activation.MYB... 0.03 OrthoFinder output from all 47 species
Aev_g03283 MYB77 MYB class-R2R3 subgroup-22/23 transcription factor &... 0.03 OrthoFinder output from all 47 species
Azfi_s0105.g044929 AtMYB117, LOF1, MYB117 MYB class-R2R3 subgroup-21 transcription factor &... 0.03 OrthoFinder output from all 47 species
Ehy_g18783 MYBR1, MYB44,... MYB class-R2R3 subgroup-22/23 transcription factor &... 0.02 OrthoFinder output from all 47 species
GSVIVT01019967001 AtMYB117, LOF1, MYB117 RNA biosynthesis.transcriptional activation.MYB... 0.02 OrthoFinder output from all 47 species
GSVIVT01026481001 BW52, ATMYB52, MYB52 RNA biosynthesis.transcriptional activation.MYB... 0.02 OrthoFinder output from all 47 species
LOC_Os06g43090.1 MYBR1, MYB44,... transcription factor (MYB) 0.02 OrthoFinder output from all 47 species
LOC_Os11g10130.1 BW52, ATMYB52,... transcription factor (MYB) 0.02 OrthoFinder output from all 47 species
Lfl_g01931 AtMYB109, MYB109 MYB class-R2R3 subgroup-22/23 transcription factor &... 0.02 OrthoFinder output from all 47 species
Lfl_g06086 MYB56, AtMYB56 MYB class-R2R3 subgroup-21 transcription factor &... 0.02 OrthoFinder output from all 47 species
Lfl_g28837 MYB3R-1,... R1R2R3-MYB transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g30617 MYB77 MYB class-R2R3 subgroup-22/23 transcription factor &... 0.04 OrthoFinder output from all 47 species
Ppi_g18972 MYB1, AtMYB1 MYB class-R2R3 subgroup-22/23 transcription factor &... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001005 SANT/Myb 77 121
IPR001005 SANT/Myb 25 71
No external refs found!