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  5. Ore_g28373

Ore_g28373


Description : regulatory protein *(LARP6) of mRNA quality control & original description: none


Gene families : OG0002191 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002191_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g28373

Target Alias Description ECC score Gene Family Method Actions
Adi_g088327 No alias regulatory protein *(LARP6) of mRNA quality control &... 0.05 OrthoFinder output from all 47 species
Ceric.03G066600.1 Ceric.03G066600 regulatory protein *(LARP6) of mRNA quality control &... 0.06 OrthoFinder output from all 47 species
Dac_g07935 No alias regulatory protein *(LARP6) of mRNA quality control &... 0.04 OrthoFinder output from all 47 species
Ehy_g04931 No alias regulatory protein *(LARP6) of mRNA quality control &... 0.02 OrthoFinder output from all 47 species
Ehy_g26244 No alias regulatory protein *(LARP6) of mRNA quality control &... 0.03 OrthoFinder output from all 47 species
Lfl_g12665 No alias regulatory protein *(LARP6) of mRNA quality control &... 0.03 OrthoFinder output from all 47 species
Pir_g23899 No alias regulatory protein *(LARP6) of mRNA quality control &... 0.03 OrthoFinder output from all 47 species
Spa_g40148 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR006630 La_HTH 369 426
No external refs found!