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  5. Ore_g27809

Ore_g27809


Description : component *(uS4) of small ribosomal-subunit (SSU) proteome & original description: none


Gene families : OG0001396 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001396_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g27809

Target Alias Description ECC score Gene Family Method Actions
AT5G15200 No alias Ribosomal protein S4 0.03 OrthoFinder output from all 47 species
Adi_g089470 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Aop_g06152 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Cre08.g359750 No alias 40S ribosomal protein S9-1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Dcu_g13407 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
GSVIVT01020020001 No alias 40S ribosomal protein S9-2 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Gb_41315 No alias component RPS9 of SSU proteome 0.03 OrthoFinder output from all 47 species
LOC_Os03g05980.1 LOC_Os03g05980 component RPS9 of SSU proteome 0.02 OrthoFinder output from all 47 species
Mp3g00520.1 No alias component RPS9 of SSU proteome 0.03 OrthoFinder output from all 47 species
Mp6g10930.1 No alias component RPS9 of SSU proteome 0.03 OrthoFinder output from all 47 species
Pp3c3_23720V3.1 Pp3c3_23720 Ribosomal protein S4 0.02 OrthoFinder output from all 47 species
Sam_g09460 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Solyc04g005680.4.1 Solyc04g005680 component RPS9 of SSU proteome 0.04 OrthoFinder output from all 47 species
Solyc05g007250.3.1 Solyc05g007250 component RPS9 of SSU proteome 0.02 OrthoFinder output from all 47 species
Spa_g19070 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Tin_g09675 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Tin_g13815 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Zm00001e010819_P002 Zm00001e010819 component RPS9 of SSU proteome 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001912 Ribosomal_S4/S9_N 8 108
IPR002942 S4_RNA-bd 109 152
No external refs found!