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  5. Ore_g27289

Ore_g27289 (PUM1, APUM1)


Aliases : PUM1, APUM1

Description : not classified & original description: none


Gene families : OG0000583 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000583_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g27289
Cluster HCCA: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00181800 PUM5, APUM5,... Pumilio homolog 5 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Adi_g011592 APUM2, PUM2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g016234 APUM4, PUM4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g067318 APUM4, PUM4 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g075414 APUM2, PUM2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g079535 APUM2, PUM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g16848 PUM1, APUM1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g61802 PUM1, APUM1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene56545.t1 PUM3, APUM3,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.16G072600.1 PUM1, APUM1,... not classified & original description: pacid=50589841... 0.03 OrthoFinder output from all 47 species
Dcu_g39769 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g25094 PUM1, APUM1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_30039 PUM1, APUM1 Pumilio homolog 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os01g74030.1 PUM1, APUM1,... Pumilio homolog 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Lfl_g08945 APUM2, PUM2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001524 APUM6, PUM6 not classified & original description: CDS=1-2589 0.02 OrthoFinder output from all 47 species
Spa_g45583 PUM3, APUM3 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g55430 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e021916_P002 APUM6, PUM6,... Pumilio homolog 5 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005096 GTPase activator activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016151 nickel cation binding IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016409 palmitoyltransferase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
CC GO:0017119 Golgi transport complex IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR012940 NABP 327 606
IPR012940 NABP 613 695
IPR001313 Pumilio_RNA-bd_rpt 883 914
IPR001313 Pumilio_RNA-bd_rpt 917 951
IPR001313 Pumilio_RNA-bd_rpt 738 764
IPR001313 Pumilio_RNA-bd_rpt 844 879
IPR001313 Pumilio_RNA-bd_rpt 772 805
IPR001313 Pumilio_RNA-bd_rpt 963 992
IPR001313 Pumilio_RNA-bd_rpt 700 734
IPR001313 Pumilio_RNA-bd_rpt 814 838
No external refs found!