Ore_g27253


Description : component *(RBM26) of PAXT nucleoplasmic activation complex & original description: none


Gene families : OG0001970 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001970_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g27253
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
AT3G27700 No alias zinc finger (CCCH-type) family protein / RNA recognition... 0.05 OrthoFinder output from all 47 species
Adi_g019332 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g055515 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g111573 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g30703 No alias component *(RBM26) of PAXT nucleoplasmic activation... 0.03 OrthoFinder output from all 47 species
Ala_g37119 No alias component *(RBM26) of PAXT nucleoplasmic activation... 0.03 OrthoFinder output from all 47 species
Als_g15540 No alias component *(RBM26) of PAXT nucleoplasmic activation... 0.04 OrthoFinder output from all 47 species
Als_g26942 No alias component *(RBM26) of PAXT nucleoplasmic activation... 0.02 OrthoFinder output from all 47 species
Aob_g09082 No alias component *(RBM26) of PAXT nucleoplasmic activation... 0.02 OrthoFinder output from all 47 species
Aspi01Gene54112.t2 Aspi01Gene54112 component *(RBM26) of PAXT nucleoplasmic activation... 0.03 OrthoFinder output from all 47 species
Aspi01Gene64678.t1 Aspi01Gene64678 component *(RBM26) of PAXT nucleoplasmic activation... 0.03 OrthoFinder output from all 47 species
Ceric.14G069200.1 Ceric.14G069200 component *(RBM26) of PAXT nucleoplasmic activation... 0.07 OrthoFinder output from all 47 species
Ceric.28G067800.1 Ceric.28G067800 component *(RBM26) of PAXT nucleoplasmic activation... 0.04 OrthoFinder output from all 47 species
Dac_g08763 No alias component *(RBM26) of PAXT nucleoplasmic activation... 0.03 OrthoFinder output from all 47 species
Dcu_g07772 No alias component *(RBM26) of PAXT nucleoplasmic activation... 0.1 OrthoFinder output from all 47 species
GSVIVT01032423001 No alias Zinc finger CCCH domain-containing protein 41... 0.08 OrthoFinder output from all 47 species
Gb_08836 No alias Zinc finger CCCH domain-containing protein 27 OS=Oryza... 0.05 OrthoFinder output from all 47 species
Gb_29092 No alias Zinc finger CCCH domain-containing protein 27 OS=Oryza... 0.07 OrthoFinder output from all 47 species
Len_g24725 No alias component *(RBM26) of PAXT nucleoplasmic activation... 0.02 OrthoFinder output from all 47 species
Lfl_g10579 No alias component *(RBM26) of PAXT nucleoplasmic activation... 0.04 OrthoFinder output from all 47 species
MA_33944g0010 No alias Zinc finger CCCH domain-containing protein 27 OS=Oryza... 0.06 OrthoFinder output from all 47 species
Mp5g00230.1 No alias Zinc finger CCCH domain-containing protein 41... 0.04 OrthoFinder output from all 47 species
Msp_g19865 No alias component *(RBM26) of PAXT nucleoplasmic activation... 0.02 OrthoFinder output from all 47 species
Msp_g48888 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g04462 No alias component *(RBM26) of PAXT nucleoplasmic activation... 0.03 OrthoFinder output from all 47 species
Pir_g10450 No alias component *(RBM26) of PAXT nucleoplasmic activation... 0.02 OrthoFinder output from all 47 species
Pir_g38052 No alias component *(RBM26) of PAXT nucleoplasmic activation... 0.02 OrthoFinder output from all 47 species
Ppi_g49412 No alias component *(RBM26) of PAXT nucleoplasmic activation... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001638 No alias component *(RBM26) of PAXT nucleoplasmic activation... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002372 No alias component *(RBM26) of PAXT nucleoplasmic activation... 0.05 OrthoFinder output from all 47 species
Sam_g29691 No alias component *(RBM26) of PAXT nucleoplasmic activation... 0.03 OrthoFinder output from all 47 species
Sam_g34389 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo437689 No alias Zinc finger CCCH domain-containing protein 27 OS=Oryza... 0.09 OrthoFinder output from all 47 species
Solyc02g086510.4.1 Solyc02g086510 Zinc finger CCCH domain-containing protein 41... 0.03 OrthoFinder output from all 47 species
Solyc12g035250.3.1 Solyc12g035250 Zinc finger CCCH domain-containing protein 41... 0.06 OrthoFinder output from all 47 species
Tin_g11114 No alias component *(RBM26) of PAXT nucleoplasmic activation... 0.03 OrthoFinder output from all 47 species
Zm00001e008334_P001 Zm00001e008334 Zinc finger CCCH domain-containing protein 27 OS=Oryza... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0032259 methylation IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR002483 PWI_dom 10 74
IPR000504 RRM_dom 672 712
No external refs found!