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  5. Ore_g26780

Ore_g26780 (NFD03, HMGB3, NFD3)


Aliases : NFD03, HMGB3, NFD3

Description : DNA bending architectural protein *(HMG-B) & original description: none


Gene families : OG0000118 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000118_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g26780

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0242.g059828 NFD03, HMGB3, NFD3 not classified & original description: CDS=1-552 0.03 OrthoFinder output from all 47 species
Dac_g31445 ATHMG, HMG, SSRP1, NFD not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g24076 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
LOC_Os01g47600.1 LOC_Os01g47600 High mobility group B protein 14 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Lfl_g24838 ATHMG, HMG, SSRP1, NFD not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g29052 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Sam_g49491 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo73858 No alias High mobility group B protein 6 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004185 serine-type carboxypeptidase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005787 signal peptidase complex IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006465 signal peptide processing IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016485 protein processing IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
CC GO:1905368 peptidase complex IEP HCCA
InterPro domains Description Start Stop
IPR009071 HMG_box_dom 99 167
No external refs found!