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  5. Ore_g26746

Ore_g26746


Description : scaffold nucleoporin of nuclear pore complex *(NUP133) & original description: none


Gene families : OG0005400 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005400_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g26746

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00088p00153240 evm_27.TU.AmTr_v1... Protein translocation.nucleus.nucleocytoplasmic... 0.05 OrthoFinder output from all 47 species
AT2G05120 No alias Nucleoporin, Nup133/Nup155-like 0.06 OrthoFinder output from all 47 species
Als_g01194 No alias scaffold nucleoporin of nuclear pore complex *(NUP133) &... 0.02 OrthoFinder output from all 47 species
Aop_g07570 No alias scaffold nucleoporin of nuclear pore complex *(NUP133) &... 0.03 OrthoFinder output from all 47 species
Azfi_s0095.g043587 No alias scaffold nucleoporin of nuclear pore complex *(NUP133) &... 0.05 OrthoFinder output from all 47 species
Cba_g01337 No alias scaffold nucleoporin of nuclear pore complex *(NUP133) &... 0.03 OrthoFinder output from all 47 species
Ceric.39G025700.1 Ceric.39G025700 scaffold nucleoporin of nuclear pore complex *(NUP133) &... 0.03 OrthoFinder output from all 47 species
Dcu_g14943 No alias scaffold nucleoporin of nuclear pore complex *(NUP133) &... 0.04 OrthoFinder output from all 47 species
Ehy_g06208 No alias scaffold nucleoporin of nuclear pore complex *(NUP133) &... 0.02 OrthoFinder output from all 47 species
GSVIVT01030051001 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.07 OrthoFinder output from all 47 species
Gb_30615 No alias NUP133 scaffold nucleoporin of nuclear pore complex 0.05 OrthoFinder output from all 47 species
LOC_Os03g12450.1 LOC_Os03g12450 NUP133 scaffold nucleoporin of nuclear pore complex 0.05 OrthoFinder output from all 47 species
Len_g19178 No alias scaffold nucleoporin of nuclear pore complex *(NUP133) &... 0.02 OrthoFinder output from all 47 species
Lfl_g25138 No alias scaffold nucleoporin of nuclear pore complex *(NUP133) &... 0.03 OrthoFinder output from all 47 species
Mp1g23960.1 No alias NUP133 scaffold nucleoporin of nuclear pore complex 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0033.g011047 No alias scaffold nucleoporin of nuclear pore complex *(NUP133) &... 0.02 OrthoFinder output from all 47 species
Sam_g07227 No alias scaffold nucleoporin of nuclear pore complex *(NUP133) &... 0.03 OrthoFinder output from all 47 species
Solyc07g047860.4.1 Solyc07g047860 NUP133 scaffold nucleoporin of nuclear pore complex 0.04 OrthoFinder output from all 47 species
Spa_g54138 No alias scaffold nucleoporin of nuclear pore complex *(NUP133) &... 0.05 OrthoFinder output from all 47 species
Zm00001e038670_P001 Zm00001e038670 NUP133 scaffold nucleoporin of nuclear pore complex 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005049 nuclear export signal receptor activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140142 nucleocytoplasmic carrier activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR007187 Nucleoporin_Nup133/Nup155_C 982 1125
IPR014908 Nucleoporin_Nup133/Nup155_N 79 515
No external refs found!