Ore_g25798


Description : not classified & original description: none


Gene families : OG0000978 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000978_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g25798

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00089p00172750 evm_27.TU.AmTr_v1... No description available 0.04 OrthoFinder output from all 47 species
AT1G48090 No alias calcium-dependent lipid-binding family protein 0.12 OrthoFinder output from all 47 species
AT4G17140 No alias pleckstrin homology (PH) domain-containing protein 0.03 OrthoFinder output from all 47 species
Adi_g011982 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g058400 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g17458 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g19181 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g05070 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g32428 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene55589.t1 Aspi01Gene55589 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0185.g056668 No alias not classified & original description: CDS=100-1869 0.04 OrthoFinder output from all 47 species
Ceric.09G071300.1 Ceric.09G071300 not classified & original description: pacid=50588528... 0.04 OrthoFinder output from all 47 species
Ceric.09G071400.1 Ceric.09G071400 not classified & original description: pacid=50587640... 0.02 OrthoFinder output from all 47 species
Dcu_g26863 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Ehy_g19066 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01013268001 No alias No description available 0.04 OrthoFinder output from all 47 species
GSVIVT01013270001 No alias No description available 0.07 OrthoFinder output from all 47 species
GSVIVT01017643001 No alias No description available 0.11 OrthoFinder output from all 47 species
Gb_15429 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os02g27110.1 LOC_Os02g27110 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Len_g08664 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Lfl_g03526 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10426328g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_10428265g0010 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
MA_10432463g0010 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
MA_119498g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_295252g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_342412g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_36612g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_901094g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Msp_g38228 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g16274 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005700 No alias not classified & original description: CDS=17-12964 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0084.g018244 No alias not classified & original description: CDS=306-11297 0.03 OrthoFinder output from all 47 species
Solyc08g077500.4.1 Solyc08g077500 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Solyc09g009370.4.1 Solyc09g009370 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Spa_g17786 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
InterPro domains Description Start Stop
IPR009291 Vps62 2027 2186
IPR009291 Vps62 2268 2410
IPR031642 VPS13_mid_RBG 579 813
IPR001849 PH_domain 836 942
IPR009543 VPS13_VAB 3425 3611
IPR026854 VPS13-like_N 2 115
IPR031646 VPS13_extend_chorein 138 380
No external refs found!