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  5. Ore_g25496

Ore_g25496 (ATRABE1D, ATRAB8C,...)


Aliases : ATRABE1D, ATRAB8C, RAB-E1D, ATRAB-E1D, RAB8C

Description : E-class RAB GTPase & original description: none


Gene families : OG0000945 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000945_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g25496

Target Alias Description ECC score Gene Family Method Actions
Adi_g117529 ATRABE1C,... E-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g07305 ATRABE1D,... E-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g22303 ATRABE1D,... E-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01016596001 No alias Vesicle trafficking.regulation of membrane tethering and... 0.05 OrthoFinder output from all 47 species
LOC_Os03g60530.1 ATRABE1C,... E-class RAB GTPase 0.04 OrthoFinder output from all 47 species
LOC_Os07g09680.1 ATRABE1E,... E-class RAB GTPase 0.02 OrthoFinder output from all 47 species
LOC_Os07g13530.1 LOC_Os07g13530 E-class RAB GTPase 0.02 OrthoFinder output from all 47 species
Len_g16013 ATRABE1D,... E-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Mp7g06380.1 No alias E-class RAB GTPase 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0031.g010582 ATRABE1C,... not classified & original description: CDS=1-537 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0036.g011564 ATRABE1C,... not classified & original description: CDS=148-741 0.03 OrthoFinder output from all 47 species
Sam_g39848 No alias E-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g52144 No alias E-class RAB GTPase & original description: none 0.03 OrthoFinder output from all 47 species
Smo437530 ATRABE1C,... Vesicle trafficking.regulation of membrane tethering and... 0.03 OrthoFinder output from all 47 species
Solyc04g011360.3.1 ATRABE1C,... E-class RAB GTPase 0.03 OrthoFinder output from all 47 species
Tin_g15580 ATRABE1C,... E-class RAB GTPase & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e011404_P001 ATRABE1C,... E-class RAB GTPase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005985 sucrose metabolic process IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016157 sucrose synthase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001806 Small_GTPase 76 237
No external refs found!