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  5. Aev_g16628

Aev_g16628 (UPL1)


Aliases : UPL1

Description : E3 ubiquitin ligase *(UPL1) & original description: none


Gene families : OG0001042 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001042_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aev_g16628
Cluster HCCA: Cluster_123

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00033p00211330 UPL1,... Protein degradation.peptide tagging.Ubiquitin... 0.08 OrthoFinder output from all 47 species
AMTR_s00061p00204480 UPL1 Protein degradation.peptide tagging.Ubiquitin... 0.05 OrthoFinder output from all 47 species
AT1G55860 UPL1 ubiquitin-protein ligase 1 0.09 OrthoFinder output from all 47 species
AT1G70320 UPL2 ubiquitin-protein ligase 2 0.13 OrthoFinder output from all 47 species
Adi_g016298 UPL2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g052147 UPL2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g077941 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g06583 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.08 OrthoFinder output from all 47 species
Ala_g06863 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.08 OrthoFinder output from all 47 species
Als_g14108 UPL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g16302 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.09 OrthoFinder output from all 47 species
Aob_g27017 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g26360 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene08879.t1 UPL1, Aspi01Gene08879 E3 ubiquitin ligase *(UPL1) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene10347.t1 UPL1, Aspi01Gene10347 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0029.g024164 UPL1 E3 ubiquitin ligase *(UPL1) & original description: CDS=1-11178 0.02 OrthoFinder output from all 47 species
Azfi_s0087.g042300 UPL1 E3 ubiquitin ligase *(UPL1) & original description: CDS=382-11403 0.02 OrthoFinder output from all 47 species
Azfi_s0116.g046399 UPL1 E3 ubiquitin ligase *(UPL1) & original description: CDS=235-11562 0.06 OrthoFinder output from all 47 species
Ceric.10G067500.1 UPL2, Ceric.10G067500 E3 ubiquitin ligase *(UPL1) & original description:... 0.08 OrthoFinder output from all 47 species
Ceric.29G011900.1 UPL1, Ceric.29G011900 E3 ubiquitin ligase *(UPL1) & original description:... 0.14 OrthoFinder output from all 47 species
Cre01.g012450 UPL1 Protein degradation.peptide tagging.Ubiquitin... 0.05 OrthoFinder output from all 47 species
Dac_g12923 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g02070 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g12771 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.09 OrthoFinder output from all 47 species
Dde_g04957 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g05120 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g10043 UPL1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g21297 UPL1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01009206001 UPL2 Protein degradation.peptide tagging.Ubiquitin... 0.1 OrthoFinder output from all 47 species
GSVIVT01009208001 UPL2 E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
GSVIVT01014697001 UPL1 E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01014698001 UPL1 Protein degradation.peptide tagging.Ubiquitin... 0.04 OrthoFinder output from all 47 species
Gb_17424 UPL1 monomeric E3 ubiquitin ligase (HECT) 0.07 OrthoFinder output from all 47 species
Gb_21632 UPL1 monomeric E3 ubiquitin ligase (HECT) 0.06 OrthoFinder output from all 47 species
Gb_26784 UPL2 E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Gb_26785 UPL1 monomeric E3 ubiquitin ligase (HECT) 0.04 OrthoFinder output from all 47 species
LOC_Os12g24080.1 UPL2, LOC_Os12g24080 monomeric E3 ubiquitin ligase (HECT) 0.06 OrthoFinder output from all 47 species
Len_g22981 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.05 OrthoFinder output from all 47 species
Len_g23822 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.09 OrthoFinder output from all 47 species
Lfl_g05050 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g40796 UPL2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_20049g0010 UPL1 monomeric E3 ubiquitin ligase (HECT) 0.08 OrthoFinder output from all 47 species
MA_20049g0020 UPL1 E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana... 0.09 OrthoFinder output from all 47 species
MA_7295g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_7295g0020 UPL2 E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis thaliana... 0.07 OrthoFinder output from all 47 species
MA_75734g0010 UPL1 E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Mp4g21620.1 UPL1 monomeric E3 ubiquitin ligase (HECT) 0.07 OrthoFinder output from all 47 species
Msp_g19139 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g48585 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g13587 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g44293 UPL2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g20483 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g57729 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g02429 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0007.g003603 UPL1 E3 ubiquitin ligase *(UPL1) & original description: CDS=387-11411 0.02 OrthoFinder output from all 47 species
Sam_g40563 No alias E3 ubiquitin ligase *(UPL1) & original description: none 0.03 OrthoFinder output from all 47 species
Smo154179 UPL2 Protein degradation.peptide tagging.Ubiquitin... 0.09 OrthoFinder output from all 47 species
Solyc04g076620.4.1 UPL1, Solyc04g076620 monomeric E3 ubiquitin ligase (HECT) 0.07 OrthoFinder output from all 47 species
Solyc07g065630.4.1 UPL1, Solyc07g065630 E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana... 0.08 OrthoFinder output from all 47 species
Spa_g17792 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g23911 UPL1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g28076 UPL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g29717 UPL1 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g33388 UPL2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g40173 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.09 OrthoFinder output from all 47 species
Spa_g45124 UPL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g52454 UPL1 E3 ubiquitin ligase *(UPL1) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g21189 UPL1 E3 ubiquiTin ligase *(UPL1) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e009321_P001 UPL1, Zm00001e009321 monomeric E3 ubiquitin ligase (HECT) 0.05 OrthoFinder output from all 47 species
Zm00001e017836_P002 UPL1, Zm00001e017836 monomeric E3 ubiquitin ligase (HECT) 0.07 OrthoFinder output from all 47 species
Zm00001e039654_P001 UPL1, Zm00001e039654 monomeric E3 ubiquitin ligase (HECT) 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002098 tRNA wobble uridine modification IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
CC GO:0033588 elongator holoenzyme complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR015940 UBA 1296 1333
IPR010309 E3_Ub_ligase_DUF908 85 366
IPR000569 HECT_dom 3531 3841
IPR025527 HUWE1/Rev1_UBM 2774 2805
IPR025527 HUWE1/Rev1_UBM 2699 2727
IPR025527 HUWE1/Rev1_UBM 2734 2766
IPR010314 E3_Ub_ligase_DUF913 427 790
No external refs found!