Ore_g20474 (ATMRE11, MRE11)

Aliases : ATMRE11, MRE11

Description : component *(MRE11) of DNA resection MRE11-RAD50-NBS1 (MRN) complex & original description: none

Gene families : OG0004519 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004519_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ore_g20474

Target	Alias	Description	ECC score	Gene Family Method
Adi_g017843	ATMRE11, MRE11	component *(MRE11) of DNA resection MRE11-RAD50-NBS1...	0.04	OrthoFinder output from all 47 species
Azfi_s0808.g087727	ATMRE11, MRE11	component *(MRE11) of DNA resection MRE11-RAD50-NBS1...	0.03	OrthoFinder output from all 47 species
Ceric.07G079200.1	ATMRE11, MRE11,...	component *(MRE11) of DNA resection MRE11-RAD50-NBS1...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000350.15	ATMRE11, MRE11	DNA damage response.DNA repair mechanisms.homologous...	0.01	OrthoFinder output from all 47 species
GSVIVT01014441001	ATMRE11, MRE11	DNA damage response.DNA repair mechanisms.homologous...	0.02	OrthoFinder output from all 47 species
MA_10426539g0010	ATMRE11, MRE11	Double-strand break repair protein MRE11 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Mp2g11510.1	ATMRE11, MRE11	component MRE11 of MRE11-RAD50-NBS1 (MRN) complex....	0.05	OrthoFinder output from all 47 species
Zm00001e006822_P002	ATMRE11, MRE11,...	component MRE11 of MRE11-RAD50-NBS1 (MRN) complex....	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006302	double-strand break repair	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0030145	manganese ion binding	IEA	Interproscan
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
CC	GO:0005643	nuclear pore	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004843	Calcineurin-like_PHP_ApaH	12	255
IPR007281	Mre11_DNA-bd	303	452

External Links

No external refs found!

Ore_g20474 (ATMRE11, MRE11)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation