1. Home
  2. Species
  3. Ophioglossum reticulatum
  4. Sequence
  5. Ore_g20350

Ore_g20350 (DEF2, ATDEF2, PDF1B)


Aliases : DEF2, ATDEF2, PDF1B

Description : EC_3.5 hydrolase acting on carbon-nitrogen bond, other than peptide bond & original description: none


Gene families : OG0005303 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005303_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g20350
Cluster HCCA: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
Adi_g045215 DEF2, ATDEF2, PDF1B EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.02 OrthoFinder output from all 47 species
Aspi01Gene02213.t1 DEF2, ATDEF2,... EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.03 OrthoFinder output from all 47 species
Ceric.21G047700.1 DEF2, ATDEF2,... EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.03 OrthoFinder output from all 47 species
Cre01.g039750 DEF2, ATDEF2, PDF1B Protein biosynthesis.organelle translation... 0.02 OrthoFinder output from all 47 species
Dde_g07189 DEF2, ATDEF2, PDF1B EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.03 OrthoFinder output from all 47 species
GSVIVT01032450001 DEF2, ATDEF2, PDF1B Protein biosynthesis.organelle translation... 0.02 OrthoFinder output from all 47 species
Lfl_g05284 DEF2, ATDEF2, PDF1B EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.03 OrthoFinder output from all 47 species
Nbi_g29976 DEF2, ATDEF2, PDF1B EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.03 OrthoFinder output from all 47 species
Pir_g12840 DEF2, ATDEF2, PDF1B EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.03 OrthoFinder output from all 47 species
Pnu_g06375 DEF2, ATDEF2, PDF1B EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.03 OrthoFinder output from all 47 species
Sam_g28123 No alias EC_3.5 hydrolase acting on carbon-nitrogen bond, other... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0042586 peptide deformylase activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
MF GO:0009916 alternative oxidase activity IEP HCCA
BP GO:0016226 iron-sulfur cluster assembly IEP HCCA
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP HCCA
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0031163 metallo-sulfur cluster assembly IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
InterPro domains Description Start Stop
IPR023635 Peptide_deformylase 95 242
No external refs found!