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  5. Ore_g19980

Ore_g19980


Description : LSU processome assembly factor *(NLE) & original description: none


Gene families : OG0005914 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005914_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g19980
Cluster HCCA: Cluster_151

Target Alias Description ECC score Gene Family Method Actions
Cre01.g000600 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
LOC_Os11g38170.2 LOC_Os11g38170 LSU processome assembly factor (NLE) 0.02 OrthoFinder output from all 47 species
Pnu_g03110 No alias LSU processome assembly factor *(NLE) & original... 0.04 OrthoFinder output from all 47 species
Tin_g12185 No alias LSU processome assembly factor *(NLE) & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004559 alpha-mannosidase activity IEP HCCA
BP GO:0005996 monosaccharide metabolic process IEP HCCA
BP GO:0006013 mannose metabolic process IEP HCCA
BP GO:0006099 tricarboxylic acid cycle IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
MF GO:0015923 mannosidase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
BP GO:0019318 hexose metabolic process IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
MF GO:0046912 acyltransferase activity, acyl groups converted into alkyl on transfer IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 100 137
IPR001680 WD40_repeat 441 472
IPR001680 WD40_repeat 142 179
IPR001680 WD40_repeat 190 227
IPR001680 WD40_repeat 394 431
IPR001680 WD40_repeat 232 267
IPR001680 WD40_repeat 358 389
IPR012972 NLE 12 72
No external refs found!