AMTR_s00092p00133670 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00092.98

Description : RNA processing.RNA splicing.spliceosome assembly/disassembly.STIPL disassembly factor


Gene families : OG_01_0003471 (Archaeplastida) Phylogenetic Tree(s): OG_01_0003471_tree ,
OG_02_0003246 (LandPlants) Phylogenetic Tree(s): OG_02_0003246_tree ,
OG_03_0004880 (SeedPlants) Phylogenetic Tree(s): OG_03_0004880_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00092p00133670
Cluster HCCA: Cluster_191

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01024262001 No alias RNA processing.RNA splicing.spliceosome... 0.03 Archaeplastida
Pp3c19_6430V3.1 No alias GC-rich sequence DNA-binding factor-like protein with... 0.02 Archaeplastida
Smo109200 No alias RNA processing.RNA splicing.spliceosome... 0.03 Archaeplastida
Zm00001e018105_P001 No alias STIPL spliceosome disassembly factor 0.02 Archaeplastida
GSVIVT01024262001 No alias RNA processing.RNA splicing.spliceosome... 0.03 LandPlants
Mp3g09910.1 No alias STIPL spliceosome disassembly factor 0.02 LandPlants
Pp3c19_6430V3.1 No alias GC-rich sequence DNA-binding factor-like protein with... 0.02 LandPlants
Smo109200 No alias RNA processing.RNA splicing.spliceosome... 0.03 LandPlants
Solyc10g005990.4.1 No alias STIPL spliceosome disassembly factor 0.02 LandPlants
GSVIVT01024262001 No alias RNA processing.RNA splicing.spliceosome... 0.03 SeedPlants
LOC_Os12g42140.1 No alias STIPL spliceosome disassembly factor 0.02 SeedPlants
Solyc10g005990.4.1 No alias STIPL spliceosome disassembly factor 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR022783 GCFC_dom 425 700
IPR022159 STIP/TFIP11_N 3 100
IPR000467 G_patch_dom 205 247
No external refs found!