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  5. Ore_g19709

Ore_g19709 (FCA)


Aliases : FCA

Description : transcription factor *(FCA/SSF) & original description: none


Gene families : OG0001208 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001208_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g19709

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00046p00168380 FCA,... Flowering time control protein FCA OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Adi_g021978 FCA transcription factor *(FCA/SSF) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g13662 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g24337 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g01730 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g03213 RBP-DR1, AtRBP-DR1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g25246 FCA transcription factor *(FCA/SSF) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.04G023200.1 FCA, Ceric.04G023200 transcription factor *(FCA/SSF) & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.06G016000.1 Ceric.06G016000 not classified & original description: pacid=50619514... 0.02 OrthoFinder output from all 47 species
Ceric.14G007400.1 FCA, Ceric.14G007400 transcription factor *(FCA/SSF) & original description:... 0.03 OrthoFinder output from all 47 species
Dcu_g18569 FCA transcription factor *(FCA/SSF) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g07627 RBP-DR1, AtRBP-DR1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g13021 FCA transcription factor *(FCA/SSF) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g19292 FCA transcription factor *(FCA/SSF) & original description: none 0.04 OrthoFinder output from all 47 species
Gb_00863 FCA no description available(sp|b8bcz8|fca_orysi : 290.0) 0.04 OrthoFinder output from all 47 species
Gb_05124 FCA no description available(sp|b8bcz8|fca_orysi : 224.0) 0.03 OrthoFinder output from all 47 species
Gb_06455 RBP-DR1, AtRBP-DR1 RNA-binding protein BRN1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os09g03610.1 FCA, LOC_Os09g03610 no description available(sp|q6k271|fca_orysj : 775.0) 0.04 OrthoFinder output from all 47 species
Lfl_g06188 FCA transcription factor *(FCA/SSF) & original description: none 0.06 OrthoFinder output from all 47 species
MA_114047g0010 FCA Flowering time control protein FCA OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
MA_5779g0010 FCA Flowering time control protein FCA OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Nbi_g11080 FCA transcription factor *(FCA/SSF) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g12927 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g13897 FCA transcription factor *(FCA/SSF) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g24304 RBP-DR1, AtRBP-DR1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g08240 FCA transcription factor *(FCA/SSF) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g31456 FCA transcription factor *(FCA/SSF) & original description: none 0.02 OrthoFinder output from all 47 species
Smo442777 RBP-DR1, AtRBP-DR1 RNA-binding protein BRN1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Solyc01g058450.3.1 FCA, Solyc01g058450 Flowering time control protein FCA OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Solyc09g074360.4.1 RBP-DR1,... RNA-binding protein BRN1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Tin_g10875 FCA transcription factor *(FCA/SSF) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g20389 RBP-DR1, AtRBP-DR1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e009433_P002 FCA, Zm00001e009433 no description available(sp|b8bcz8|fca_orysi : 625.0) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006476 protein deacetylation IEP HCCA
BP GO:0015074 DNA integration IEP HCCA
MF GO:0015930 glutamate synthase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016575 histone deacetylation IEP HCCA
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP HCCA
BP GO:0035601 protein deacylation IEP HCCA
BP GO:0098732 macromolecule deacylation IEP HCCA
InterPro domains Description Start Stop
IPR001202 WW_dom 590 616
IPR000504 RRM_dom 119 185
No external refs found!