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  5. Ore_g19690

Ore_g19690 (MGP3)


Aliases : MGP3

Description : nuclear-encoded organellar RNA polymerase *(NEP) & original description: none


Gene families : OG0002420 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002420_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g19690
Cluster HCCA: Cluster_130

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00254180 evm_27.TU.AmTr_v1... RNA biosynthesis.organelle machineries.RNA polymerase... 0.02 OrthoFinder output from all 47 species
AT2G24120 PDE319, SCA3 DNA/RNA polymerases superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G15700 No alias DNA/RNA polymerases superfamily protein 0.02 OrthoFinder output from all 47 species
Aev_g06151 No alias nuclear-encoded organellar RNA polymerase *(NEP) &... 0.04 OrthoFinder output from all 47 species
Aop_g19093 No alias nuclear-encoded organellar RNA polymerase *(NEP) &... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021493.49 PDE319, SCA3 RNA biosynthesis.organelle machineries.RNA polymerase... 0.02 OrthoFinder output from all 47 species
Cre02.g075600 No alias RNA biosynthesis.organelle machineries.RNA polymerase... 0.01 OrthoFinder output from all 47 species
Dac_g06640 No alias nuclear-encoded organellar RNA polymerase *(NEP) &... 0.03 OrthoFinder output from all 47 species
Dac_g12046 No alias nuclear-encoded organellar RNA polymerase *(NEP) &... 0.02 OrthoFinder output from all 47 species
Ehy_g14002 No alias nuclear-encoded organellar RNA polymerase *(NEP) &... 0.04 OrthoFinder output from all 47 species
GSVIVT01023660001 PDE319, SCA3 RNA biosynthesis.organelle machineries.RNA polymerase... 0.02 OrthoFinder output from all 47 species
GSVIVT01036518001 No alias RNA biosynthesis.organelle machineries.RNA polymerase... 0.02 OrthoFinder output from all 47 species
Gb_02899 MGP3 nuclear-encoded organellar RNA polymerase (NEP) 0.02 OrthoFinder output from all 47 species
LOC_Os09g07120.1 LOC_Os09g07120 nuclear-encoded organellar RNA polymerase (NEP) 0.02 OrthoFinder output from all 47 species
Lfl_g35363 No alias nuclear-encoded organellar RNA polymerase *(NEP) &... 0.02 OrthoFinder output from all 47 species
Mp3g02090.1 No alias nuclear-encoded organellar RNA polymerase (NEP) 0.02 OrthoFinder output from all 47 species
Msp_g14542 No alias nuclear-encoded organellar RNA polymerase *(NEP) &... 0.02 OrthoFinder output from all 47 species
Ore_g43034 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g13046 No alias nuclear-encoded organellar RNA polymerase *(NEP) &... 0.02 OrthoFinder output from all 47 species
Ppi_g33572 No alias nuclear-encoded organellar RNA polymerase *(NEP) &... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0035.g011471 No alias nuclear-encoded organellar RNA polymerase *(NEP) &... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0040.g012306 No alias nuclear-encoded organellar RNA polymerase *(NEP) &... 0.03 OrthoFinder output from all 47 species
Sam_g26719 No alias nuclear-encoded organellar RNA polymerase *(NEP) &... 0.02 OrthoFinder output from all 47 species
Sam_g51936 No alias nuclear-encoded organellar RNA polymerase *(NEP) &... 0.02 OrthoFinder output from all 47 species
Spa_g10286 No alias nuclear-encoded organellar RNA polymerase *(NEP) &... 0.02 OrthoFinder output from all 47 species
Spa_g19377 No alias nuclear-encoded organellar RNA polymerase *(NEP) &... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0034450 ubiquitin-ubiquitin ligase activity IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR029262 RPOL_N 644 894
No external refs found!