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Aliases : LINC2
Description : nuclear lamina lamin-like protein *(CRWN) & original description: none
Gene families : OG0002096 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002096_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00044p00204550 | LINC4,... | Cytoskeleton.cytoskeleton-nucleoskeleton linking.nuclear... | 0.03 | OrthoFinder output from all 47 species | |
| AT1G13220 | LINC2 | nuclear matrix constituent protein-related | 0.03 | OrthoFinder output from all 47 species | |
| AT1G67230 | LINC1 | little nuclei1 | 0.02 | OrthoFinder output from all 47 species | |
| AT1G68790 | LINC3 | little nuclei3 | 0.03 | OrthoFinder output from all 47 species | |
| AT5G65770 | LINC4 | little nuclei4 | 0.03 | OrthoFinder output from all 47 species | |
| AT5G65780 | ATBCAT-5 | branched-chain amino acid aminotransferase 5 /... | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g018491 | LINC3 | nuclear lamina lamin-like protein *(CRWN) & original... | 0.05 | OrthoFinder output from all 47 species | |
| Adi_g055294 | LINC2 | nuclear lamina lamin-like protein *(CRWN) & original... | 0.04 | OrthoFinder output from all 47 species | |
| Ala_g08422 | LINC2 | nuclear lamina lamin-like protein *(CRWN) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Als_g29067 | LINC2 | nuclear lamina lamin-like protein *(CRWN) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g07969 | LINC2 | nuclear lamina lamin-like protein *(CRWN) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g06258 | LINC2 | nuclear lamina lamin-like protein *(CRWN) & original... | 0.04 | OrthoFinder output from all 47 species | |
| Azfi_s0006.g010369 | LINC2 | nuclear lamina lamin-like protein *(CRWN) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.07G023500.1 | LINC2, Ceric.07G023500 | nuclear lamina lamin-like protein *(CRWN) & original... | 0.05 | OrthoFinder output from all 47 species | |
| Ceric.31G070800.1 | LINC2, Ceric.31G070800 | nuclear lamina lamin-like protein *(CRWN) & original... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01011972001 | LINC3 | Cytoskeleton.cytoskeleton-nucleoskeleton linking.nuclear... | 0.07 | OrthoFinder output from all 47 species | |
| GSVIVT01031076001 | LINC1 | Cytoskeleton.cytoskeleton-nucleoskeleton linking.nuclear... | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os01g56140.1 | LINC4, LOC_Os01g56140 | CRWN nuclear lamina lamin-like protein | 0.07 | OrthoFinder output from all 47 species | |
| LOC_Os02g48010.1 | LINC1, LOC_Os02g48010 | CRWN nuclear lamina lamin-like protein | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g03466 | LINC3 | nuclear lamina lamin-like protein *(CRWN) & original... | 0.04 | OrthoFinder output from all 47 species | |
| MA_78855g0010 | No alias | no hits & (original description: none) | 0.02 | OrthoFinder output from all 47 species | |
| Mp3g21160.1 | LINC2 | CRWN nuclear lamina lamin-like protein | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g26620 | LINC2 | nuclear lamina lamin-like protein *(CRWN) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g03849 | LINC2 | nuclear lamina lamin-like protein *(CRWN) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g40515 | LINC1 | nuclear lamina lamin-like protein *(CRWN) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g46798 | LINC4 | nuclear lamina lamin-like protein *(CRWN) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0112.g020733 | LINC2 | nuclear lamina lamin-like protein *(CRWN) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g14580 | No alias | nuclear lamina lamin-like protein *(CRWN) & original... | 0.05 | OrthoFinder output from all 47 species | |
| Solyc02g089800.3.1 | LINC1, Solyc02g089800 | CRWN nuclear lamina lamin-like protein | 0.02 | OrthoFinder output from all 47 species | |
| Solyc02g091960.4.1 | LINC4, Solyc02g091960 | CRWN nuclear lamina lamin-like protein | 0.04 | OrthoFinder output from all 47 species | |
| Solyc03g045050.4.1 | LINC1, Solyc03g045050 | CRWN nuclear lamina lamin-like protein | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e019705_P002 | LINC4, Zm00001e019705 | CRWN nuclear lamina lamin-like protein | 0.07 | OrthoFinder output from all 47 species | |
| Zm00001e023357_P001 | LINC1, Zm00001e023357 | CRWN nuclear lamina lamin-like protein | 0.06 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | HCCA |
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| MF | GO:0005524 | ATP binding | IEP | HCCA |
| BP | GO:0006351 | DNA-templated transcription | IEP | HCCA |
| BP | GO:0006511 | ubiquitin-dependent protein catabolic process | IEP | HCCA |
| MF | GO:0008094 | ATP-dependent activity, acting on DNA | IEP | HCCA |
| BP | GO:0009057 | macromolecule catabolic process | IEP | HCCA |
| MF | GO:0016887 | ATP hydrolysis activity | IEP | HCCA |
| MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
| MF | GO:0019899 | enzyme binding | IEP | HCCA |
| BP | GO:0019941 | modification-dependent protein catabolic process | IEP | HCCA |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
| MF | GO:0031625 | ubiquitin protein ligase binding | IEP | HCCA |
| MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
| BP | GO:0032774 | RNA biosynthetic process | IEP | HCCA |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
| MF | GO:0036094 | small molecule binding | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| MF | GO:0043168 | anion binding | IEP | HCCA |
| BP | GO:0043632 | modification-dependent macromolecule catabolic process | IEP | HCCA |
| BP | GO:0044248 | cellular catabolic process | IEP | HCCA |
| BP | GO:0044265 | cellular macromolecule catabolic process | IEP | HCCA |
| MF | GO:0044389 | ubiquitin-like protein ligase binding | IEP | HCCA |
| MF | GO:0050660 | flavin adenine dinucleotide binding | IEP | HCCA |
| BP | GO:0051603 | proteolysis involved in protein catabolic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | HCCA |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
| MF | GO:0140658 | ATP-dependent chromatin remodeler activity | IEP | HCCA |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |