Ore_g19173 (emb1354, CDC48C)

Aliases : emb1354, CDC48C

Description : platform ATPase CDC48 & original description: none

Gene families : OG0000324 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000324_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ore_g19173

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00072p00117380	evm_27.TU.AmTr_v1...	Cell division control protein 48 homolog D...	0.03	OrthoFinder output from all 47 species
AMTR_s00085p00052820	CDC48A, CDC48,...	Cell division cycle protein 48 homolog OS=Glycine max	0.03	OrthoFinder output from all 47 species
Adi_g080379	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aev_g04868	emb1354, CDC48C	platform ATPase CDC48 & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g20068	CIP111	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g07270	emb1354, CDC48C	platform ATPase CDC48 & original description: none	0.05	OrthoFinder output from all 47 species
Ala_g09138	CIP111	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g20264	No alias	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g04257	No alias	platform ATPase CDC48 & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g05302	emb1354, CDC48C	platform ATPase CDC48 & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene45727.t1	CIP111, Aspi01Gene45727	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g15787	CDC48B	platform ATPase CDC48 & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.16G061700.1	emb1354, CDC48C,...	platform ATPase CDC48 & original description:...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000525.10	emb1354, CDC48C	Cell division control protein 48 homolog C...	0.01	OrthoFinder output from all 47 species
Dac_g09762	emb1354, CDC48C	platform ATPase CDC48 & original description: none	0.05	OrthoFinder output from all 47 species
Dcu_g04096	CIP111	platform ATPase CDC48 & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g10601	emb1354, CDC48C	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g03992	emb1354, CDC48C	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g07885	No alias	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g09095	CDC48B	platform ATPase CDC48 & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g09970	No alias	platform ATPase CDC48 & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01007689001	No alias	Cell division cycle protein 48 homolog OS=Glycine max	0.03	OrthoFinder output from all 47 species
GSVIVT01010343001	emb1354, CDC48C	Cell division control protein 48 homolog C...	0.05	OrthoFinder output from all 47 species
Gb_01408	CIP111	Calmodulin-interacting protein 111 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
LOC_Os06g01980.1	emb1354, CDC48C,...	Cell division control protein 48 homolog C...	0.02	OrthoFinder output from all 47 species
Len_g28733	CIP111	platform ATPase CDC48 & original description: none	0.02	OrthoFinder output from all 47 species
MA_10431342g0010	CIP111	Calmodulin-interacting protein 111 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Mp2g12350.1	emb1354, CDC48C	Calmodulin-interacting protein 111 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
Msp_g15410	emb1354, CDC48C	platform ATPase CDC48 & original description: none	0.04	OrthoFinder output from all 47 species
Nbi_g36367	CIP111	platform ATPase CDC48 & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g01985	No alias	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g52066	CDC48B	platform ATPase CDC48 & original description: none	0.04	OrthoFinder output from all 47 species
Pnu_g13016	CIP111	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g08291	emb1354, CDC48C	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g18794	No alias	platform ATPase CDC48 & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g53020	emb1354, CDC48C	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g12429	No alias	platform ATPase CDC48 & original description: none	0.03	OrthoFinder output from all 47 species
Solyc06g074980.3.1	Solyc06g074980	platform ATPase (CDC48)	0.03	OrthoFinder output from all 47 species
Spa_g12521	CIP111	platform ATPase CDC48 & original description: none	0.05	OrthoFinder output from all 47 species
Tin_g15152	emb1354, CDC48C	platform ATPase CDC48 & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e000416_P002	Zm00001e000416	platform ATPase (CDC48)	0.03	OrthoFinder output from all 47 species
Zm00001e021405_P001	CIP111, Zm00001e021405	Calmodulin-interacting protein 111 OS=Arabidopsis...	0.05	OrthoFinder output from all 47 species
Zm00001e035514_P002	emb1354, CDC48C,...	Cell division control protein 48 homolog C...	0.02	OrthoFinder output from all 47 species
Zm00001e041158_P001	CDC48B, Zm00001e041158	Cell division control protein 48 homolog B...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0004843	cysteine-type deubiquitinase activity	IEP	HCCA
BP	GO:0005984	disaccharide metabolic process	IEP	HCCA
BP	GO:0005991	trehalose metabolic process	IEP	HCCA
BP	GO:0005992	trehalose biosynthetic process	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
MF	GO:0008234	cysteine-type peptidase activity	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
BP	GO:0009311	oligosaccharide metabolic process	IEP	HCCA
BP	GO:0009312	oligosaccharide biosynthetic process	IEP	HCCA
BP	GO:0016579	protein deubiquitination	IEP	HCCA
MF	GO:0019783	ubiquitin-like protein peptidase activity	IEP	HCCA
BP	GO:0034637	cellular carbohydrate biosynthetic process	IEP	HCCA
BP	GO:0046351	disaccharide biosynthetic process	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
MF	GO:0101005	deubiquitinase activity	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
MF	GO:0140658	ATP-dependent chromatin remodeler activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR041569	AAA_lid_3	890	927
IPR041569	AAA_lid_3	565	600
IPR031996	NVL2_nucleolin-bd	15	79
IPR003959	ATPase_AAA_core	396	541
IPR003959	ATPase_AAA_core	739	867

External Links

No external refs found!

Ore_g19173 (emb1354, CDC48C)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation