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  5. Ore_g19053

Ore_g19053 (ISE2, PDE317, EMB25)


Aliases : ISE2, PDE317, EMB25

Description : group-II intron splicing RNA helicase *(ISE2) & original description: none


Gene families : OG0004771 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004771_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ore_g19053

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00090p00178540 ISE2, PDE317,... RNA processing.organelle machineries.RNA... 0.04 OrthoFinder output from all 47 species
AT1G70070 ISE2, PDE317, EMB25 DEAD/DEAH box helicase, putative 0.06 OrthoFinder output from all 47 species
Ala_g22694 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.05 OrthoFinder output from all 47 species
Als_g16449 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.06 OrthoFinder output from all 47 species
Aop_g13240 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.05 OrthoFinder output from all 47 species
Azfi_s0003.g007647 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.06 OrthoFinder output from all 47 species
Cba_g14553 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.03 OrthoFinder output from all 47 species
Ceric.18G021200.1 ISE2, PDE317,... group-II intron splicing RNA helicase *(ISE2) & original... 0.04 OrthoFinder output from all 47 species
Dcu_g20011 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.08 OrthoFinder output from all 47 species
Dde_g08182 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.04 OrthoFinder output from all 47 species
Ehy_g05098 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01020137001 ISE2, PDE317, EMB25 RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
LOC_Os02g50560.1 ISE2, PDE317,... RNA helicase (ISE2) 0.1 OrthoFinder output from all 47 species
Len_g22559 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.03 OrthoFinder output from all 47 species
Lfl_g12767 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.04 OrthoFinder output from all 47 species
MA_10437000g0010 ISE2, PDE317, EMB25 RNA helicase (ISE2) 0.01 OrthoFinder output from all 47 species
MA_10437000g0020 ISE2, PDE317, EMB25 DExH-box ATP-dependent RNA helicase DExH15 chloroplastic... 0.02 OrthoFinder output from all 47 species
Mp4g01470.1 ISE2, PDE317, EMB25 RNA helicase (ISE2) 0.04 OrthoFinder output from all 47 species
Msp_g14107 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.02 OrthoFinder output from all 47 species
Nbi_g18791 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.03 OrthoFinder output from all 47 species
Pir_g14171 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.03 OrthoFinder output from all 47 species
Pnu_g09563 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.04 OrthoFinder output from all 47 species
Ppi_g08266 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.06 OrthoFinder output from all 47 species
Sam_g07224 No alias group-II intron splicing RNA helicase *(ISE2) & original... 0.03 OrthoFinder output from all 47 species
Spa_g26560 ISE2, PDE317, EMB25 group-II intron splicing RNA helicase *(ISE2) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e015769_P001 ISE2, PDE317,... RNA helicase (ISE2) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004366 glycerol-3-phosphate O-acyltransferase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004749 ribose phosphate diphosphokinase activity IEP HCCA
BP GO:0006457 protein folding IEP HCCA
MF GO:0008374 O-acyltransferase activity IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016778 diphosphotransferase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0070569 uridylyltransferase activity IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR012961 Ski2/MTR4_C 965 1131
IPR011545 DEAD/DEAH_box_helicase_dom 138 292
No external refs found!