Ore_g18847

Description : component *(uL2) of large ribosomal-subunit (LSU) proteome & original description: none

Gene families : OG0001846 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001846_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ore_g18847
Cluster	HCCA: Cluster_11

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00029p00109050	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
AT2G18020	EMB2296	Ribosomal protein L2 family	0.04	OrthoFinder output from all 47 species
AT4G36130	No alias	Ribosomal protein L2 family	0.04	OrthoFinder output from all 47 species
Adi_g047038	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ala_g12035	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Als_g43864	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Aop_g12168	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Cba_g37121	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ceric.30G024600.1	Ceric.30G024600	component *(uL2) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020965.22	EMB2296	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
Cre12.g535851	EMB2296	Protein biosynthesis.cytosolic ribosome.large subunit...	0.05	OrthoFinder output from all 47 species
Dac_g02131	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
LOC_Os12g38000.1	LOC_Os12g38000	component RPL8 of LSU proteome component	0.03	OrthoFinder output from all 47 species
Lfl_g24495	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
MA_10427309g0010	No alias	60S ribosomal protein L8-3 OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species
MA_8358181g0010	No alias	60S ribosomal protein L8 OS=Nicotiana tabacum...	0.02	OrthoFinder output from all 47 species
Mp7g01860.1	EMB2296	component RPL8 of LSU proteome component	0.05	OrthoFinder output from all 47 species
Mp7g08730.1	EMB2296	component RPL8 of LSU proteome component	0.05	OrthoFinder output from all 47 species
Pir_g12813	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Pp3c12_10200V3.1	EMB2296, Pp3c12_10200	Ribosomal protein L2 family	0.05	OrthoFinder output from all 47 species
Pp3c4_12690V3.1	EMB2296, Pp3c4_12690	Ribosomal protein L2 family	0.04	OrthoFinder output from all 47 species
Pp3c4_12720V3.1	EMB2296, Pp3c4_12720	Ribosomal protein L2 family	0.04	OrthoFinder output from all 47 species
Ppi_g33659	EMB2296	component *(uL2) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sam_g13695	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g13696	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Smo170971	EMB2296	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
Solyc07g063890.2.1	Solyc07g063890	component RPL8 of LSU proteome component	0.04	OrthoFinder output from all 47 species
Solyc12g005330.2.1	Solyc12g005330	component RPL8 of LSU proteome component	0.05	OrthoFinder output from all 47 species
Spa_g30832	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Spa_g39107	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Spa_g52209	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Tin_g00494	No alias	component *(uL2) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Zm00001e002931_P001	EMB2296, Zm00001e002931	component RPL8 of LSU proteome component	0.06	OrthoFinder output from all 47 species
Zm00001e018178_P001	EMB2296, Zm00001e018178	component RPL8 of LSU proteome component	0.06	OrthoFinder output from all 47 species
Zm00001e033350_P001	EMB2296, Zm00001e033350	component RPL8 of LSU proteome component	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000139	Golgi membrane	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0005338	nucleotide-sugar transmembrane transporter activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
CC	GO:0005783	endoplasmic reticulum	IEP	HCCA
BP	GO:0006457	protein folding	IEP	HCCA
BP	GO:0006486	protein glycosylation	IEP	HCCA
BP	GO:0006487	protein N-linked glycosylation	IEP	HCCA
BP	GO:0006694	steroid biosynthetic process	IEP	HCCA
BP	GO:0008202	steroid metabolic process	IEP	HCCA
CC	GO:0008250	oligosaccharyltransferase complex	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
BP	GO:0008610	lipid biosynthetic process	IEP	HCCA
MF	GO:0015165	pyrimidine nucleotide-sugar transmembrane transporter activity	IEP	HCCA
BP	GO:0015780	nucleotide-sugar transmembrane transport	IEP	HCCA
BP	GO:0015931	nucleobase-containing compound transport	IEP	HCCA
MF	GO:0015932	nucleobase-containing compound transmembrane transporter activity	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
BP	GO:0043413	macromolecule glycosylation	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
MF	GO:0051082	unfolded protein binding	IEP	HCCA
BP	GO:0070085	glycosylation	IEP	HCCA
BP	GO:0090481	pyrimidine nucleotide-sugar transmembrane transport	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
CC	GO:0098588	bounding membrane of organelle	IEP	HCCA
CC	GO:0140534	endoplasmic reticulum protein-containing complex	IEP	HCCA
BP	GO:1901264	carbohydrate derivative transport	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
MF	GO:1901505	carbohydrate derivative transmembrane transporter activity	IEP	HCCA
CC	GO:1990234	transferase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR022666	Rbsml_prot_L2_RNA-bd_dom	13	90
IPR022669	Ribosomal_L2_C	98	225

External Links

No external refs found!

Ore_g18847

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation